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. 2012 Feb 14;7(2):e31862. doi: 10.1371/journal.pone.0031862

Table 2. Polymorphism and somatic mutation frequency of microsatellite repeats in miRNA genes.

CRC cell lines Colorectal primary tumors
miRNA gene LBL (%) Polymorphism MSS (%) MSI (%) P value MSS (%) MSI (%) P value
MNR
hsa-mir-1302-7 1/33 (3%)a yes 0/13 (0%) 0/14 (0%)b NS 0/24 (0%) 1/36 (2.8%)b NS
hsa-mir-511 3/40 (7.5%)a yes 0/13 (0%) 0/14 (0%)b NS 0/23 (0%) 0/36 (0%)b NS
hsa-mir-543 6/35 (17.1%)a yes 0/13 (0%) 1/14 (7%)b NS 0/25 (0%) 2/39 (5%)b NS
hsa-mir-548f-3 0/36 (0%) no 0/13 (0%) 0/14 (0%) NS 0/23 (0%) 0/36 (0%) NS
hsa-mir-548f-5 0/38 (0%) no 0/13 (0%) 0/14 (0%) NS 0/24 (0%) 1/40 (2.5%) NS
hsa-mir-548u 0/32 (0%) no 0/13 (0%) 0/12 (0%) NS 0/23 (0%) 0/39 (0%) NS
hsa-mir-328 0/34 (0%) no 0/12 (0%) 0/14 (0%) NS 0/22 (0%) 0/40 (0%) NS
hsa-mir-1225 0/37 (0%) no 0/13 (0%) 0/13 (0%) NS 1/22 (4,6%) 0/33 (0%) NS
hsa-mir-4271 0/33 (0%) no 0/10 (0%) 0/13 (0%) NS 0/23 (0%) 1/38 (2.6%) NS
hsa-mir-92b 0/38 (0%) no 0/13 (0%) 0/14 (0%) NS 0/24 (0%) 0/40 (0%) NS
hsa-mir-152 0/40 (0%) no 0/13 (0%) 0/14 (0%) NS 0/20 (0%) 0/37 (0%) NS
hsa-mir-296 0/36 (0%) no 0/13 (0%) 0/14 (0%) NS 0/24 (0%) 0/38 (0%) NS
hsa-mir-1249 0/23 (0%) no 1/13 (7.7%) 0/13 (0%) NS 0/24 (0%) 2/39 (5%) NS
hsa-mir-320c-1 0/38 (0%) no 0/13 (0%) 0/14 (0%) NS 0/23 (0%) 1/38 (2.6%) NS
hsa-mir-525 0/38 (0%) no 0/13 (0%) 2/14 (14.3%) NS 0/21 (0%) 0/33 (0%) NS
hsa-mir-320b-2 0/37 (0%) no 0/13 (0%) 1/14 (7.1%) NS 0/24 (0%) 3/40 (7.5%) NS
hsa-mir-644 0/40 (0%) no 0/12 (0%) 6/14 (42.9%) 0.03 0/23 (0%) 8/39 (20.5%) 0.053
hsa-mir-4329 0/40 (0%) no 2/12 (16.7%) 0/13 (0%) NS 0/22 (0%) 6/38 (15.8%) NS
hsa-mir-1273c 0/32 (0%) no 0/13 (0%) 9/11 (82%) <0.0001 0/25 (0%) 33/39 (84.6%) <0.0001
hsa-mir-567 0/39 (0%) no 0/12 (0%) 14/14 (100%) <0.0001 2/25 (8%) 31/39 (79.5%) <0.0001
hsa-mir-1303 20/39 (51%)a yes 0/13 (0%) 12/14 (85.7%)b <0.0001 0/23 (0%) 33/40 (82.5%)b <0.0001
DNR
hsa-mir-1277 0/40 (0%) no 0/13 (0%) 0/14 (0%) NS 0/25 (0%) 1/41 (2.4%) NS
hsa-mir-620 32/40 (80%)a yes 0/13 (0%) 1/14 (7%)b NS 0/21 (0%) 1/38 (2.6%)b NS
hsa-mir-558 35/40 (87.5%)a yes 0/12 (0%) 4/13 (30.8%)b 0.095 0/24 (0%) 12/38 (31.6%)b 0.006

NS, not significant;

a

the polymorphism rate is the percentage of normal samples showing length variations when compared to the major peak (see Table S1, Figure S1);

b

mutation rates were estimated by taking into account sizes that diverge from the normal polymorphism (refer to Figure S1).