Table 2.
data seta | inter-R5 distance (Å)
|
|||
---|---|---|---|---|
DEER measuredb | EPR-based modelc | crystal structured | ||
HT vs HL | (76; 95) | 28 | 26.4 | 27.6 |
(79; 95) | 38 | 37.5 | 38.0 | |
(88; 95) | 34 | 30.3 | 29.7 | |
(26; 76) | 28e | 30.7 | 23.7 | |
(26; 79) | 35e | 31.6 | 30.1 | |
(26; 88) | 37 | 37.2 | 10.7 | |
HT vs HR | (26; 37) | 39 | 38.6 | 44.8 |
(33; 95) | 32e | 30.4 | 40.8 | |
(37; 95) | 40 | 43.4 | 45.5 | |
(66; 95) | 30e | 25.9 | 22.8 | |
HR vs HL | (33; 76) | 39 | 41.0 | 23.5 |
(33; 79) | 44 | 43.0 | 38.1 | |
(37; 76) | 48 | 50.8 | 36.4 | |
(37; 79) | 49 | 47.4 | 52.6 | |
(37; 88) | 40 | 39.3 | 50.2 | |
(66; 76) | 35 | 38.8 | 18.8 | |
(66; 79) | 41 | 39.1 | 35.6 | |
RMSDdeer | - | 2.43 | 10.2 |
Each designated by corresponding labeling site numbers.
Most probable distances listed. Estimated errors are less than 7% based on repeated measurements.
Inter-NOX distances (see Materials and Methods) in the best-fit model shown in Figure 3A.
NASNOX predicted average inter-R5 distances obtained from the pRNA tetramer crystal structure.43
Major population listed.