TABLE 1.
Parameter estimates of four bird phylogenies for the protracted birth model (pb, using likelihood) and the protracted birth–death model (pbd, using least squares)
Data set | Model | λ 1 = λ3 (Myr −1) | λ 2 (Myr −1) | μ 1 = μ2 (Myr −1) | GOF | τ (Myr ) |
Acanthiza | pb | 0.47 | 0.04 | 0 | – 7.89 | 5.16 |
pbd | 0.66 | 0.07 | 0.3 | 0.35 | 3.81 | |
Cracidae | pb | 0.96 | 0.12 | 0 | 1.13 | 2.31 |
pbd | 1.09 | 0.16 | 0.3 | 0.47 | 1.95 | |
Myiborus | pb | 0.48 | 0.89 | 0 | – 2.71 | 0.89 |
pbd | 0.81 | 0.39 | 0.3 | 0.41 | 1.29 | |
Toxostoma | pb | 0.43 | 0.05 | 0 | – 8.34 | 5.19 |
pbd | 0.65 | 0.06 | 0.3 | 0.24 | 3.98 |
Because the extinction rate cannot be estimated reliably (the goodness of fit [GOF] did not change over a wide range of extinction values), the reported value of 0.3 was set beforehand. Also shown are the corresponding values of the GOF statistic, i.e. maximum likelihood and least-ssquared distance, and the estimated average duration of speciation (τ).