Table 3. Frequencies of favorable alleles of 15 SNP markers in the 1.5 Mb GGA1 region of 173.5–175 Mb.
SNP | Position | Allele | FA | WRR | WRR1 | XH | BEH |
GGaluGA054833 | 173504098 | C/T | C | 0.83(80) | 0.77(78) | 0.27(79) | 0.24(58) |
rs15497877 | 173593810 | C/T | C | 0.52(80) | 0.80(79) | 0.38(79) | 0.24(58) |
rs15497910 | 173613981 | A/G | A | 0.38(80) | 0.76(79) | 0.44(79) | 0.78(59) |
GGaluGA054930 | 173841982 | C/T | C | 0.95(80) | 0.96(79) | 0.59(77) | 0.53(58) |
rs13972304 | 173931557 | A/C | A | 1.00(80) | 1.00(79) | 0.38(79) | 0.44(59) |
GGaluGA054970 | 173993933 | T/G | G | 0.66(80) | 0.55(79) | 0.17(79) | 0.14(59) |
rs13553164 | 174027867 | C/T | T | 0.64(80) | 0.51(77) | 0.07(77) | 0.02(59) |
rs14917305 | 174093115 | C/T | C | 0.79(70) | 0.64(77) | 0.06(79) | 0.18(59) |
GGaluGA055001 | 174122198 | A/G | G | 0.59(80) | 0.27(79) | 0.74(79) | 0.51(57) |
rs14917647 | 174379124 | C/A | A | 0.66(80) | 0.41(79) | 0.05(79) | 0.06(59) |
rs13553485 | 174594379 | C/A | C | 1.00(80) | 0.94(79) | 0.71(79) | 0.44(58) |
GGaluGA055291 | 174783129 | C/T | C | 0.61(80) | 0.51(79) | 0.54(79) | 0.76(59) |
rs13973515 | 174847719 | C/T | T | 0.57(80) | 0.69(78) | 0.25(79) | 0.05(59) |
GGaluGA055359 | 174921993 | A/G | A | 0.87(80) | 0.99(79) | 0.35(79) | 0.38(59) |
GGaluGA055379 | 174961349 | C/T | C | 0.66(80) | 0.56(79) | 0.26(79) | 0.36(59) |
FA = favorable allele for fast growing. Number in parentheses was the sample size. Bold face markers had unexpected frequencies for the favorable allele, lower in WRR and WRR1 and higher in XH and BEH.