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. 2012 Feb 16;7(2):e31604. doi: 10.1371/journal.pone.0031604

Figure 5. Identification of New IS Element Insertion Points in 2009 Strains.

Figure 5

A) Locations of new IS element insertions. IS element insertions were identified in templated assembly experiments using CO92 as a reference. New insertion points were identified using Newbler's 454HCStructVars.txt file and the identity of the newly inserted element was determined by BLAST analysis of sequence reads containing novel junctions. Shaded square indicates the presence of an IS element beginning at the indicated nucleotide position. B) Phylogenetic analysis of 2009 strains using Maximum Likelihood method. Each insertion was treated as a single character. C) Phylogenetic analysis using Maximum Parsimony method.