Skip to main content
. 2012 Feb 17;3:49. doi: 10.3389/fmicb.2012.00049

Table A1.

Taxonomic identification of the Great Barrier Reef subsurface sequence data set.

Phylum Class Order Family Genus 2 m
20 m
40 m
4°C −80°C 4°C −80°C 4°C −80°C
Acidobacteria 0.1 0.0 0.0 0.0 0.0 0.0
Acidobacteria (class) 0.1 0.0 0.0 0.0 0.0 0.0
Acidobacteriales 0.1 0.0 0.0 0.0 0.0 0.0
Acidobacteriaceae 0.1 0.0 0.0 0.0 0.0 0.0
Acidobacterium 0.1 0.0 0.0 0.0 0.0 0.0
Actinobacteria 0.4 5.4 15.3 4.5 10.3 25.9
Actinobacteria (class) 0.4 5.4 15.3 4.5 10.3 25.9
Acidimicrobiales 0.0 0.0 0.1 0.0 0.0 0.0
Acidimicrobiaceae 0.0 0.0 0.1 0.0 0.0 0.0
Acidimicrobiaceae (genus) 0.0 0.0 0.1 0.0 0.0 0.0
Actinomycetales 0.4 5.4 15.2 4.5 5.9 25.9
Actinomycetaceae 0.1 0.0 0.0 0.0 0.0 0.0
Actinomyces 0.1 0.0 0.0 0.0 0.0 0.0
Corynebacteriaceae 0.0 0.0 0.0 0.3 2.4 7.0
Corynebacterium 0.0 0.0 0.0 0.3 2.4 7.0
Geodermatophilaceae 0.0 0.0 0.0 0.0 0.5 8.1
Geodermatophilaceae (genus) 0.0 0.0 0.0 0.0 0.0 8.1
Geodermatophilus 0.0 0.0 0.0 0.0 0.5 0.0
Intrasporangiaceae 0.0 0.1 1.7 0.0 0.1 0.0
Intrasporangium 0.0 0.0 0.0 0.0 0.1 0.0
Ornithinimicrobium 0.0 0.1 0.0 0.0 0.0 0.0
Phycicoccus 0.0 0.0 0.2 0.0 0.0 0.0
Terrabacter 0.0 0.0 1.5 0.0 0.0 0.0
Microbacteriaceae 0.0 0.0 8.6 0.2 0.0 10.6
Frondihabitans 0.0 0.0 0.0 0.0 0.0 2.7
Labedella 0.0 0.0 8.6 0.0 0.0 0.0
Leifsonia 0.0 0.0 0.0 0.0 0.0 0.1
Microbacteriaceae (genus) 0.0 0.0 0.0 0.0 0.0 0.1
Microbacterium 0.0 0.0 0.0 0.2 0.0 2.4
Schumannella 0.0 0.0 0.0 0.0 0.0 5.3
Micrococcaceae 0.0 0.0 0.8 0.0 0.2 0.0
Arthrobacter 0.0 0.0 0.8 0.0 0.0 0.0
Kocuria 0.0 0.0 0.0 0.0 0.2 0.0
Nocardiaceae 0.0 2.8 0.1 0.0 0.0 0.0
Rhodococcus 0.0 2.8 0.1 0.0 0.0 0.0
Nocardioidaceae 0.0 2.4 0.4 3.5 0.0 0.0
Nocardioides 0.0 2.4 0.4 3.5 0.0 0.0
Propionibacteriaceae 0.3 0.1 3.6 0.5 2.7 0.2
Propionibacterium 0.3 0.1 3.6 0.5 2.7 0.2
Solirubrobacterales 0.0 0.0 0.0 0.0 4.3 0.0
Solirubrobacteraceae 0.0 0.0 0.0 0.0 4.3 0.0
Solirubrobacter 0.0 0.0 0.0 0.0 4.3 0.0
Bacteroidetes 15.3 0.0 0.0 0.0 6.2 1.1
Bacteroidia 0.0 0.0 0.0 0.0 0.0 1.1
Bacteroidales 0.0 0.0 0.0 0.0 0.0 1.1
Marinilabiaceae 0.0 0.0 0.0 0.0 0.0 1.1
Alkaliflexus 0.0 0.0 0.0 0.0 0.0 1.1
Cytophagia 2.7 0.0 0.0 0.0 0.1 0.0
Cytophagales 2.7 0.0 0.0 0.0 0.1 0.0
Cytophagaceae 2.7 0.0 0.0 0.0 0.1 0.0
Cytophaga 2.7 0.0 0.0 0.0 0.0 0.0
Meniscus 0.0 0.0 0.0 0.0 0.1 0.0
Flavobacteria 12.2 0.0 0.0 0.0 6.2 0.0
Flavobacteriales 12.2 0.0 0.0 0.0 6.2 0.0
Flavobacteriaceae 12.2 0.0 0.0 0.0 6.2 0.0
Flavobacterium 0.0 0.0 0.0 0.0 0.1 0.0
Oceanistipes 0.1 0.0 0.0 0.0 0.0 0.0
Psychroserpens 0.2 0.0 0.0 0.0 0.0 0.0
Tenacibaculum 0.0 0.0 0.0 0.0 6.1 0.0
Xanthobacillum 11.8 0.0 0.0 0.0 0.0 0.0
Sphingobacteria 0.4 0.0 0.0 0.0 0.0 0.0
Sphingobacteriales 0.4 0.0 0.0 0.0 0.0 0.0
Sphingobacteriales (family) 0.4 0.0 0.0 0.0 0.0 0.0
Sphingobacteriales (genus) 0.4 0.0 0.0 0.0 0.0 0.0
2.9 1.8 0.0 0.2 0.0 0.0
Anaerolineae 2.1 1.8 0.0 0.0 0.0 0.0
Anaerolineales 2.1 1.8 0.0 0.0 0.0 0.0
Anaerolineaceae 2.1 1.8 0.0 0.0 0.0 0.0
Anaerolinea 0.0 1.8 0.0 0.0 0.0 0.0
Levilinea 2.1 0.0 0.0 0.0 0.0 0.0
Caldilineae 0.0 0.0 0.0 0.2 0.0 0.0
Caldilineales 0.0 0.0 0.0 0.2 0.0 0.0
Caldilineaceae 0.0 0.0 0.0 0.2 0.0 0.0
Caldilinea 0.0 0.0 0.0 0.2 0.0 0.0
Chloroflexi (class) 0.9 0.0 0.0 0.0 0.0 0.0
Chloroflexales 0.9 0.0 0.0 0.0 0.0 0.0
Chloroflexaceae 0.9 0.0 0.0 0.0 0.0 0.0
Chloroflexus 0.9 0.0 0.0 0.0 0.0 0.0
0.6 0.0 4.0 0.0 0.9 0.3
Cyanobacteria (class) 0.6 0.0 4.0 0.0 0.9 0.3
Nostocales 0.0 0.0 0.1 0.0 0.9 0.0
Microchaetaceae 0.0 0.0 0.1 0.0 0.0 0.0
Tolypothrix 0.0 0.0 0.1 0.0 0.0 0.0
Nostocaceae 0.0 0.0 0.0 0.0 0.9 0.0
Nostoc 0.0 0.0 0.0 0.0 0.9 0.0
Oscillatoriales 0.1 0.0 3.7 0.0 0.0 0.0
Oscillatoriales (family) 0.1 0.0 3.7 0.0 0.0 0.0
Leptolyngbya 0.1 0.0 3.7 0.0 0.0 0.0
Pleurocapsales 0.5 0.0 0.1 0.0 0.0 0.3
Pleurocapsales (family) 0.5 0.0 0.1 0.0 0.0 0.3
Chroococcidiopsis 0.5 0.0 0.1 0.0 0.0 0.3
Stigonematales 0.0 0.0 0.1 0.0 0.0 0.0
Stigonematales (family) 0.0 0.0 0.1 0.0 0.0 0.0
Stigonematales (genus) 0.0 0.0 0.1 0.0 0.0 0.0
0.0 0.0 0.0 0.0 0.0 3.9
Deinococci 0.0 0.0 0.0 0.0 0.0 3.9
Deinococcales 0.0 0.0 0.0 0.0 0.0 3.9
Deinococcaceae 0.0 0.0 0.0 0.0 0.0 3.9
Deinococcus 0.0 0.0 0.0 0.0 0.0 3.9
30.0 69.1 21.2 63.3 23.5 38.3
Bacilli 6.5 9.2 1.4 1.3 0.1 18.8
Bacillales 3.1 0.0 0.1 0.6 1.7 0.0
Bacillaceae 1.1 0.0 0.0 0.0 0.0 0.0
Bacillaceae (genus) 1.1 0.0 0.0 0.0 0.0 0.0
Bacillales (family) 0.0 0.0 0.1 0.6 1.7 0.0
Exiguobacterium 0.0 0.0 0.1 0.0 0.0 0.0
Planococcaceae 2.1 0.0 0.0 0.0 0.0 0.0
Planococcus 2.1 0.0 0.0 0.0 0.0 0.0
Lactobacillales 4.2 17.4 13.6 35.2 14.9 22.7
Carnobacteriaceae 3.4 0.0 0.0 0.0 0.0 0.0
Marinilactibacillus 3.4 0.0 0.0 0.0 0.0 0.0
Lactobacillaceae 0.0 9.3 13.6 35.2 10.3 20.9
Lactobacillus 0.0 9.3 13.6 35.2 10.3 20.9
Clostridia 22.6 51.7 7.5 27.6 6.9 15.7
Clostridia (order) 19.7 0.0 0.0 0.0 0.0 0.0
Clostridia (family) 19.7 0.0 0.0 0.0 0.0 0.0
Clostridia (genus) 19.7 0.0 0.0 0.0 0.0 0.0
Clostridiales 3.0 51.7 7.5 27.6 6.9 15.7
Clostridiaceae 1.7 10.1 0.0 0.0 0.0 1.5
Clostridiisalibacter 1.6 0.0 0.0 0.0 0.0 0.0
Clostridium 0.1 0.0 0.0 0.0 0.0 1.5
Sarcina 0.0 10.1 0.0 0.0 0.0 0.0
Clostridiales (family) 0.0 0.0 7.3 0.3 0.0 0.0
Anaerococcus 0.0 0.0 7.3 0.0 0.0 0.0
Clostridiales (genus) 0.0 0.0 0.0 0.3 0.0 0.0
Eubacteriaceae 0.2 0.0 0.0 0.0 0.0 0.5
Eubacterium 0.2 0.0 0.0 0.0 0.0 0.5
Lachnospiraceae 0.0 24.5 0.0 0.0 3.5 0.0
Roseburia 0.0 24.5 0.0 0.0 3.5 0.0
Peptostreptococcaceae 0.0 0.0 0.2 0.0 0.0 0.0
Peptostreptococcus 0.0 0.0 0.2 0.0 0.0 0.0
Ruminococcaceae 1.1 17.0 0.0 27.2 3.4 13.6
Ethanoligenens 0.0 0.0 0.0 0.0 0.0 0.2
Faecalibacterium 0.0 17.0 0.0 0.0 0.0 0.0
Ruminococcus 1.1 0.0 0.0 27.2 3.4 13.4
Firmicutes (class) 0.8 8.2 12.3 34.5 16.5 3.8
Bacillales 3.1 0.0 0.1 0.6 1.7 0.0
Bacillales (family) 0.0 0.0 0.1 0.6 1.7 0.0
Staphylococcus 0.0 0.0 0.1 0.6 1.7 0.0
Lactobacillales 4.2 17.4 13.6 35.2 14.9 22.7
Enterococcaceae 0.0 8.1 0.0 0.0 0.0 0.0
Enterococcus 0.0 8.1 0.0 0.0 0.0 0.0
Lactobacillaceae 0.0 9.3 13.6 35.2 10.3 20.9
Lactobacillus 0.0 9.3 13.6 35.2 10.3 20.9
Streptococcaceae 0.8 0.0 0.0 0.0 4.6 1.8
Streptococcus 0.8 0.0 0.0 0.0 4.6 1.8
0.0 0.9 0.0 0.0 0.0 0.0
Nitrospirae (class) 0.0 0.9 0.0 0.0 0.0 0.0
Nitrospirales 0.0 0.9 0.0 0.0 0.0 0.0
Nitrospiraceae 0.0 0.9 0.0 0.0 0.0 0.0
Nitrospira 0.0 0.9 0.0 0.0 0.0 0.0
50.6 11.3 59.6 31.9 59.2 30.2
Alphaproteobacteria 2.5 0.0 0.0 9.4 5.4 9.6
Kopriimonadales 0.0 0.0 0.0 0.0 0.1 0.0
Kopriimonadaceae 0.0 0.0 0.0 0.0 0.1 0.0
Kopriimonas 0.0 0.0 0.0 0.0 0.1 0.0
Rhizobiales 0.1 0.0 0.0 6.9 0.1 2.5
Bradyrhizobiaceae 0.0 0.0 0.0 0.3 0.0 0.0
Bradyrhizobium 0.0 0.0 0.0 0.3 0.0 0.0
Hyphomicrobiaceae 0.0 0.0 0.0 0.0 0.1 0.0
Zhangella 0.0 0.0 0.0 0.0 0.1 0.0
Methylobacteriaceae 0.0 0.0 0.0 0.3 0.0 2.5
Methylobacterium 0.0 0.0 0.0 0.3 0.0 2.5
Rhizobiaceae 0.1 0.0 0.0 6.2 0.0 0.0
Rhizobium 0.1 0.0 0.0 6.2 0.0 0.0
Rhodobacterales 1.1 0.0 0.0 0.0 0.0 0.0
Rhodobacteraceae 1.1 0.0 0.0 0.0 0.0 0.0
Citreicella 0.9 0.0 0.0 0.0 0.0 0.0
Rhodobacter 0.1 0.0 0.0 0.0 0.0 0.0
Roseobacter 0.1 0.0 0.0 0.0 0.0 0.0
Rhodospirillales 1.4 0.0 0.0 0.2 2.9 0.0
Acetobacteraceae 0.0 0.0 0.0 0.2 0.0 0.0
Acetobacteraceae (genus) 0.0 0.0 0.0 0.2 0.0 0.0
Rhodospirillaceae 1.4 0.0 0.0 0.0 2.9 0.0
Roseospira 1.4 0.0 0.0 0.0 2.9 0.0
Sphingomonadales 0.0 0.0 0.0 2.3 2.3 7.1
Sphingomonadaceae 0.0 0.0 0.0 2.3 2.3 7.1
Sphingomonadaceae (genus) 0.0 0.0 0.0 2.3 0.0 0.0
Sphingomonas 0.0 0.0 0.0 0.0 2.3 7.1
Betaproteobacteria 0.3 0.1 47.1 6.1 0.3 9.3
Burkholderiales 0.3 0.1 44.3 6.1 0.3 9.3
Alcaligenaceae 0.0 0.1 0.0 0.0 0.0 0.0
Achromobacter 0.0 0.1 0.0 0.0 0.0 0.0
Comamonadaceae 0.3 0.0 44.3 4.5 0.3 9.3
Delftia 0.3 0.0 44.3 4.5 0.0 9.3
Macromonas 0.0 0.0 0.0 0.0 0.3 0.0
Oxalobacteraceae 0.0 0.0 0.0 1.5 0.0 0.0
Duganella 0.0 0.0 0.0 1.5 0.0 0.0
Neisseriales 0.0 0.0 2.8 0.0 0.0 0.0
Neisseriaceae 0.0 0.0 2.8 0.0 0.0 0.0
Neisseria 0.0 0.0 2.8 0.0 0.0 0.0
Deltaproteobacteria 12.6 0.0 1.6 0.0 0.0 0.0
Desulfobacterales 3.3 0.0 0.0 0.0 0.0 0.0
Desulfobulbaceae 3.3 0.0 0.0 0.0 0.0 0.0
Desulforhopalus 0.2 0.0 0.0 0.0 0.0 0.0
Desulfotalea 3.0 0.0 0.0 0.0 0.0 0.0
Desulfuromonadales 9.3 0.0 0.0 0.0 0.0 0.0
Desulfuromonadaceae 0.4 0.0 0.0 0.0 0.0 0.0
Desulfuromonas 0.4 0.0 0.0 0.0 0.0 0.0
Geobacteraceae 8.9 0.0 0.0 0.0 0.0 0.0
Geopsychrobacter 8.9 0.0 0.0 0.0 0.0 0.0
Myxococcales 0.0 0.0 1.6 0.0 0.0 0.0
Cystobacteraceae 0.0 0.0 1.6 0.0 0.0 0.0
Melittangium 0.0 0.0 1.6 0.0 0.0 0.0
Epsilonproteobacteria 1.3 0.0 0.0 0.0 0.0 0.0
Campylobacterales 1.3 0.0 0.0 0.0 0.0 0.0
Campylobacteraceae 1.3 0.0 0.0 0.0 0.0 0.0
Arcobacter 1.3 0.0 0.0 0.0 0.0 0.0
Gammaproteobacteria 33.9 11.2 10.9 16.4 53.5 11.3
Alteromonadales 1.3 0.0 0.0 0.0 11.2 0.0
Alteromonadaceae 0.6 0.0 0.0 0.0 11.2 0.0
Marinobacter 0.3 0.0 0.0 0.0 5.3 0.0
Marinobacterium 0.0 0.0 0.0 0.0 5.9 0.0
Saccharophagus 0.3 0.0 0.0 0.0 0.0 0.0
Colwelliaceae 0.3 0.0 0.0 0.0 0.0 0.0
Colwellia 0.3 0.0 0.0 0.0 0.0 0.0
Moritellaceae 0.4 0.0 0.0 0.0 0.0 0.0
Moritella 0.4 0.0 0.0 0.0 0.0 0.0
Enterobacteriales 0.0 3.2 8.6 5.5 4.3 8.9
Enterobacteriaceae 0.0 3.2 8.6 5.5 4.3 8.9
Escherichia 0.0 3.2 8.4 0.7 0.0 7.9
Proteus 0.0 0.0 0.0 0.0 4.3 0.0
Shigella 0.0 0.0 0.2 4.8 0.0 0.9
Oceanospirillales 27.5 0.0 1.5 0.0 27.9 0.0
Halomonadaceae 24.2 0.0 1.5 0.0 27.9 0.0
Halomonas 24.2 0.0 1.5 0.0 27.9 0.0
Oceanospirillales (family) 3.3 0.0 0.0 0.0 0.0 0.0
Neptuniibacter 1.2 0.0 0.0 0.0 0.0 0.0
Oceanospirillales (genus) 2.2 0.0 0.0 0.0 0.0 0.0
Pseudomonadales 3.6 0.2 0.7 10.9 1.1 0.0
Moraxellaceae 2.2 0.0 0.0 0.0 1.1 0.0
Psychrobacter 2.2 0.0 0.0 0.0 1.1 0.0
Pseudomonadaceae 1.4 0.2 0.7 10.9 0.1 0.0
Pseudomonas 1.4 0.2 0.7 10.9 0.1 0.0
Thiotrichales 1.4 0.0 0.0 0.0 7.8 0.0
Piscirickettsiaceae 1.4 0.0 0.0 0.0 7.8 0.0
Methylophaga 0.0 0.0 0.0 0.0 7.8 0.0
Thiomicrospira 1.4 0.0 0.0 0.0 0.0 0.0
Vibrionales 0.0 0.0 0.0 0.0 1.2 2.4
Vibrionaceae 0.0 0.0 0.0 0.0 1.2 2.4
Vibrio 0.0 0.0 0.0 0.0 1.2 2.4
Xanthomonadales 0.0 7.8 0.0 0.0 0.1 0.0
Xanthomonadaceae 0.0 7.8 0.0 0.0 0.1 0.0
Lysobacter 0.0 0.0 0.0 0.0 0.1 0.0
Stenotrophomonas 0.0 7.8 0.0 0.0 0.0 0.0
Verrucomicrobia 0.0 9.6 0.0 0.0 0.0 0.3
Opitutae 0.0 0.0 0.0 0.0 0.0 0.3
Opitutales 0.0 0.0 0.0 0.0 0.0 0.3
Opitutaceae 0.0 0.0 0.0 0.0 0.0 0.3
Opitutus 0.0 0.0 0.0 0.0 0.0 0.3
Spartobacteria 0.0 0.2 0.0 0.0 0.0 0.0
Spartobacteria (order) 0.0 0.2 0.0 0.0 0.0 0.0
Spartobacteria (family) 0.0 0.2 0.0 0.0 0.0 0.0
Chthoniobacter 0.0 0.2 0.0 0.0 0.0 0.0
Verrucomicrobia 0.0 9.4 0.0 0.0 0.0 0.0
Verrucomicrobiales 0.0 9.4 0.0 0.0 0.0 0.0
Verrucomicrobiaceae 0.0 9.4 0.0 0.0 0.0 0.0
Verrucomicrobium 0.0 9.4 0.0 0.0 0.0 0.0
WS3 0.0 1.9 0.0 0.0 0.0 0.0
WS3 (class) 0.0 1.9 0.0 0.0 0.0 0.0
WS3 (order) 0.0 1.9 0.0 0.0 0.0 0.0
WS3 (family) 0.0 1.9 0.0 0.0 0.0 0.0
WS3 (genus) 0.0 1.9 0.0 0.0 0.0 0.0