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. 2011 Dec 13;287(6):3930–3945. doi: 10.1074/jbc.M111.320341

TABLE 4.

X-ray modeling fits for the MBL dimer, trimer, and tetramer solution structures

Search Filter Models Hydrated spheres Rg Rxs R-factor
nm nm %
MBL dimer search 1 (0 nm separation) None 6,859 1,471–1,755 7.40–12.30 0.05–2.88 10.9–15.6
N, Rg, Rxs, R 12 1,527–1,733 7.60–11.38 1.67–2.30 10.9–11.6
Best-fit 1 1,695 9.88 2.11 11.9
Experimentala NAb 1,609 10.42 1.84 NA
MBL dimer search 2 (3.3 nm separation) None 6,859 1,596–1,756 7.39–11.83 0.13–2.69 8.7–16.6
N, Rg, Rxs, R 12 1,659–1,731 10.43–11.12 1.70–2.09 8.7–9.1
Best-fit 1 1,710 10.43 2.09 9.0
MBL dimer search 3 (4.8 nm separation) None 6,859 1,592–1,748 7.42–12.10 0.02–2.76 9.5–16.3
N, Rg, Rxs, R 12 1,673–1,718 10.66–11.01 2.01–2.22 9.5–9.9
Best-fit 1 1,717 10.79 2.10 9.5
MBL dimer search 4 (6.6 nm separation) None 6,859 1,416–1,747 7.35–13.80 0.01–2.86 9.9–16.0
N, Rg, Rxs, R 12 1,660–1,712 10.25–10.97 1.97–2.44 10.2–10.4
Best-fit 1 1,684 10.46 2.32 10.2
MBL trimer search 1 None 6,859 2,269–2,554 10.74–14.79 0.61–2.99 7.1–17.2
N, Rg, Rxs, R 12 2,416–2,524 10.96–12.26 1.34–2.49 7.1–7.5
Best-fit 1 2,518 12.25 2.03 7.4
MBL trimer search 2 None 2,028 2,253–2,591 0.34–15.80 0.04–3.17 7.1–79.0
N, Rg, Rxs, R 12 2,507–2,552 12.33–12.89 1.21–2.15 7.1–8.0
Best-fit 1 2,530 12.60 1.87 7.1
Experimentala NA 2,413 12.43 1.95 NA
MBL tetramer search 1 None 900 3,033–3,411 1.20–44.28 0.01–7.50 14.2 to >100
N, Rg, Rxs, R 10 3,221–3,344 14.12–17.85 1.17–4.1 14.5–17.6
Best-fit 1 3,296 17.08 1.43 14.5
Experimental NA 3,217 13.80 2.20 NA

a The experimental values are the same in the four dimer and two trimer searches.

b NA means not applicable.

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