Table 4. Detailed analysis of compositional biases in budding yeast amyloid-type Prionogenic sequences.
| Database Identifier | Name and Prion [in square brackets] | Compositional biases* |
| PD0023 | Serine/threonine-protein_kinase_CBK1[Alberti, et al. 2009 data] | 188/249/5.4e-46/Q; 85/179/2.2e-12/SNP |
| PD0026 | Prion_formation_protein_1_NEW1 [NU+] | 68/94/8.5e-27/NY; 60/103/3.6e-10/Y; 332/417/4.7e-08/SLV |
| PD0028 | Asparagine-rich_protein_NRP1 [Alberti, et al. 2009 data] | 391/567/4.7e-56/N; 383/715/1.6e-48/NS |
| PD0029 | SWI/SNF_chromatin-remodeling_complex_subunit_SWI1 [SWI+] | 4/322/3.2e-67/N 336/384/1.1e-36/Q; 913/1260/1.6e-20/NSI; 14/31/8.2e-09/T; 87/298/9.1e-09/S; 592/692/1.0e-08/K; 568/585/1.3e-08/N |
| PD0033 | U6_snRNA-associated_Sm-like_protein_Lsm4 [Alberti, et al. 2009 data] | 93/166/6.5e-26/N |
| PD0034 | Uncharacterized_protein_YBL081W [Alberti, et al. 2009 data] | 30/353/2.3e-48/NSYHQ; 195/353/1.9e-21/S; 48/153/1.1e-07/Y |
| PD0035 | Nuclear_and_cytoplasmic_polyadenylated_RNA-binding_protein_PUB1 [Alberti, et al. 2009 data] | 242/287/4.7e-26/NM; 419/452/1.5e-21/Q; 273/303/8.4e-11/M |
| PD0040 | Protein_URE2 [URE3] | 2/78/3.2e-25/N |
| PD0044 | Nitrogen_regulatory_protein_GLN3 [Alberti, et al. 2009 data] | 142/630/4.0e-59/NS; 124/617/2.4e-30/N; 146/630/2.7e-26/S; 644/716/1.7e-10/SN; 68/119/3.1e-08/TD |
| PD0734 | G_protein-coupled_receptor_GPR1 [Alberti, et al. 2009 data] | 490/557/2.1e-59/N; 91/288/1.7e-14/IFNYW; 675/736/2.9e-12/KWY; 854/947/4.1e-07/SN |
| PD0920 | Mediator_of_RNA_polymerase_II_transcription_subunit_3_PGD1 [Alberti, et al. 2009 data] | 277/373/7.6e-29/QNM; 256/392/7.1e-14/N; 202/259/2.2e-08/AP |
| PD0921 | Uncharacterized_RNA-binding_protein_YPL184C [Alberti, et al. 2009 data] | 5/27/2.7e-27/N; 98/124/1.2e-10/Q |
| PD2094 | global_transcriptional_regulator_Sfp1 [ISP+] | 21/517/3.2e-34/NSHIT; 531/554/7.4e-23/D; 3/20/1.34e-07/T; 9/502/2.5e-07/S; 311/327/3.6e-07/Q; 139/155/4.9e-07/A; 213/517/3.4e-05/H; 175/202/9.9e-05/Y; 467/490/1.1e-04/D; 556/570/2.1e-04/N; 614/628/4.4e-04/H; 26/136/5.8e-04/I; 510/525/6.4e-03/S |
| PD0021 | General_transcriptional_corepressor_CYC8 [OCT+] | 492/586/2.2e-81/QA; 698/952/7.5e-30/ESTPNAQ; 14/29/2.9e-23/Q; 509/555/4.6e-14/A; 116/373/2.7e-08/YW |
| PD0022 | Uncharacterized_protein_YBR016W [Alberti, et al. 2009 data] | 40/100/6.2e-33/QYN; 5/96/1.0e-07/Y |
| PD0024 | Eukaryotic_peptide_chain_release_factor_GTP-binding_subunit_SUP35 [PSI+] | 4/122/1.8e-49/QYNG; 158/221/3.7e-16/EK; 12/112/2.3e-11/Y; 138/218/7.9e-10/K; 138/218/7.9e-10/K; 4/108/1.1e-08/N |
| PD0025 | RNQ1 [RNQ+]/[PIN+] | 123/402/5.6e-82/QNSGY; 185/402/6.5e-16/N; 7/344/7.1e-13/S; 50/381/1.3e-10/G |
| PD0027 | mRNA-binding_protein_PUF2 [Alberti, et al. 2009 data] | 909/1062/2.5e-51/N; 52/486/3.2e-31/SQTNP; 241/470/4.7e-10/Q; 710/756/5.8e-09/LTIN; 854/1015/2.8e-08/SQ; 55/254/6.2e-08/T; 140/476/8.5e-08/N |
| PD0031 | Zinc_finger_protein_YPR022C [Alberti, et al. 2009 data] | 158/319/8.1e-42/Q; 20/472/1.2e-15/NPS; 732/1040/2.8e-09/NI |
| PD0032 | transcription_factor_RLM1 [Alberti, et al. 2009 data] | 212/629/4.5e-55/NSP; 228/629/3.4e-18/S; 94/353/3.1e-10/N; 186/549/8.8e-10/P; 451/475/1.5e-08/Q; 119/133/2.6e-07/D |
| PD0036 | transcriptional_activator/repressor_MOT3 [MOT3+] | 4/488/4.4e-45/NH; 7/34/3.0e-26/Q; 231/337/2.1e-10/P; 4/396/1.4e-09/H; 431/449/2.6e-07/AS |
| PD0037 | Serine/threonine-protein_kinase_KSP1 [Alberti, et al. 2009 data] | 538/939/4.7e-33/NSH; 53/83/1.3e-10/D; 590/972/1.5e-08/S; 454/494/9.6e-08/K |
| PD0038 | Nucleoporin_ASM4 [Alberti, et al. 2009 data] | 52/496/5.7e-25/NS; 18/48/4.8e-15/Q; 52/426/2.4e-07/S |
| PD0043 | Nucleoporin_NSP1 [Alberti, et al. 2009 data] | 1/515/8.1e-54/NSTFAG; 288/642/7.3e-19/KD; 80/553/2.5e-12/S; 4/280/1.1e-09/T; 63/551/1.5e-08/F; 656/797/2.0e-08/NQ |
| PD2217 | transcriptional_regulatory_protein_SAP30 [Alberti, et al. 2009 data] | 25/57/4.6e-30/N |
*The biases are in the following format: start point/end point/binomial P-value/bias signature. Residues contributing significantly to the bias are sorted in decreasing order of precedence, i.e., for the bias signature NSHIT, N is the main bias, S is the most important subsidiary bias, and so on. NS biases are in bold text. All biases with P-value< = 10−6 are listed.