Table 3.

Distribution of 192 annotated transcripts (common to C and CT berries but differentially modulated during ripening) into eight clusters according to the gene expression trends.

		CLUSTER 1	CLUSTER 2	CLUSTER 3	CLUSTER 4	CLUSTER 5	CLUSTER 6	CLUSTER 7	CLUSTER 8
Carbohydrate metabolic process	C	0	0	3	0	0	2	0	0
	CT	0	3	0	0	0	0	2	0
Cell wall organization or biogenesis	C	0	4	6	0	0	1	0	0
	CT	0	6	3	1	0	0	1	0
Cellular amino acid and derivative metabolic process	C	0	2	5	0	0	1	1	0
	CT	1	5	1	1	0	0	0	1
Cellular homeostasis	C	0	2	3	0	0	1	0	0
	CT	0	3	0	2	0	0	1	0
Cellular process	C	1	2	6	0	0	2	2	1
	CT	0	6	1	2	0	2	2	1
Developmental process	C	0	1	4	1	0	3	0	1
	CT	0	5	0	1	0	1	2	1
Generation of precursor metabolites and energy	C	0	0	27	1	0	0	0	0
	CT	1	25	0	2	0	0	0	0
Hormone metabolic process	C	0	1	4	0	0	0	0	0
	CT	0	4	1	0	0	0	0	0
Lipid metabolic process	C	0	2	4	0	0	1	0	1
	CT	0	2	1	3	0	1	1	0
Nitrogen compound metabolic process	C	0	0	1	0	0	0	0	0
	CT	0	1	0	0	0	0	0	0
Nucleic acid metabolic process	C	0	0	2	0	0	0	0	0
	CT	0	2	0	0	0	0	0	0
Protein metabolic process	C	0	0	0	0	0	0	0	0
	CT	0	0	0	0	0	0	0	0
Response to hormone stimulus	C	0	0	9	0	0	0	1	0
	CT	0	7	0	2	0	1	0	0
Response to stress	C	0	1	7	0	0	2	4	2
	CT	1	7	1	0	0	2	2	3
Secondary metabolic process	C	0	3	3	2	0	0	10	0
	CT	0	4	2	2	0	9	0	1
Signal transduction	C	0	2	9	0	0	2	0	0
	CT	0	8	1	2	0	0	2	0
Transcription	C	0	1	11	0	0	1	2	0
	CT	0	9	0	3	0	2	1	0
Transport	C	0	3	8	3	0	3	3	1
	CT	0	11	0	3	0	3	3	1
TOTAL DIFFERENTIAL MODULATED GENES per CLUSTER	C	1	24	112	7	0	19	23	6
	CT	3	108	11	24	0	21	17	8

In each cluster, transcripts are divided according to their functional categories.