Table 1. Apple cultivars used for low coverage re-sequencing and subsequent single nucleotide polymorphism detection.
| Accession | Number of reads | Type of reads | Estimated genome coverage (X) | Location of sequencing |
| ‘Braeburn’ | 34,699,040 | Paired-end | 6.9 | PFR |
| ‘Co-op 15’ | 51,864,610 | Single-end | 5.2 | ARC |
| ‘Cox's Orange Pippin’ | 35,120,961 | Paired-end | 7.0 | PFR & ARC |
| ‘Crimson Crisp’ | 6,128,575 | Paired-end | 1.3 | RosBREED |
| ‘Cripps Pink’ | 56,738,286 | Single-end | 6.1 | ARC |
| ‘Delicious’ | 17,995,052 | Paired-end | 1.9 | RosBREED |
| ‘Dolgo’ | 59,863,282 | Single-end | 6.4 | ARC |
| ‘Duchess of Oldenburg’ | 17,762,643 | Paired-end | 3.8 | RosBREED |
| F226829-2-2 | 31,580,732 | Paired-end | 6.7 | RosBREED |
| ‘Frostbite’ | 44,740,552 | Single-end | 4.5 | ARC |
| ‘Fuji’ | 44,545,764 | Single-end | 4.8 | ARC |
| ‘Geneva’ | 31,977,525 | Paired-end | 6.4 | PFR |
| ‘Golden Delicious’ | 22,101,159 | Paired-end | 4.7 | RosBREED |
| ‘Granny Smith’ | 36,112,204 | Paired-end | 7.2 | PFR |
| ‘Haralson’ | 15,499,148 | Paired-end | 3.3 | RosBREED |
| ‘Honeycrisp’ | 20,887,451 | Paired-end | 4.5 | RosBREED |
| ‘Idared’ | 33,479,444 | Paired-end | 6.7 | PFR |
| ‘James Grieve’ | 26,005,304 | Paired-end | 5.2 | PFR |
| ‘Jonathan’ | 18,812,375 | Paired-end | 4.0 | RosBREED |
| ‘McIntosh’ | 59,934,507 | Paired-end | 12.8 | RosBREED |
| Malus sieversii PI613981 | 23,500,375 | Paired-end | 4.7 | USDA-ARS |
| ‘Ralls Janet’ | 35,485,026 | Paired-end | 7.1 | PFR |
| ‘Red Delicious’ | 25,993,982 | Paired-end | 5.2 | PFR |
| ‘Red Dougherty’ | 32,718,666 | Paired-end | 6.5 | PFR |
| ‘Rome Beauty’ | 23,220,046 | Paired-end | 5.0 | RosBREED |
| ‘Splendour’ | 36,353,918 | Paired-end | 7.3 | PFR |
| ‘Zestar’ | 54,404,792 | Single-end | 5.4 | ARC |
An approximate genome coverage was estimated for each accession using a genome size of 750 Mb. The source of cultivars and numbers of Illumina GA II reads obtained are indicated. ARC: Agricultural Research Council, South Africa; PFR: The New Zealand Institute for Plant & Food Research Ltd; RosBREED: U.S.-based international project.