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. 2012 Feb 21;7(2):e31832. doi: 10.1371/journal.pone.0031832

Table 2. Strains, Vectors, Primers.

Name Description Source/other info
Bacterial Strains
Variovorax paradoxus EPS Wild type strain collected at CSUSB this study
V. paradoxus EPS mut86 Tn5 insertion in wbuB at nt24 this study
V. paradoxus EPS mut223 Tn5 insertion in pilY1 at nt1347 this study
V. paradoxus EPS mut99 Tn5 insertion in shkS at nt413 this study
E. coli DH5α F endA1 glnV44 thi-1 recA1 relA1 gyrA96 deoR nupG Φ80dlacZΔM15 Δ(lacZYA-argF)U169, hsdR17(rK mK +), λ– [40]
E. coli S17-1λpir thi pro hsdR hsdM+ recA RP4 2-Tc::Mu-Km::Tn7(TpR SmR) λ-pir [41]
Plasmids
pOT182 pSUP102::Tn5 [33]
pCR2.1 TA vector Invitrogen
pBBR1MCS-2 Broad host range vector [42]
pWbuB pBBR1MCS2:Varpa_4680 This study
pPilY1 pBBR1MCS2:Varpa_5900 This study
pShkR pBBR1MCS2:Varpa_4664 This study
pShkS pBBR1MCS2:Varpa_4665 This study
Primers
Erc2 ACAGATTTAGCCCAGTCGG Sequencing rescue clones
Hgal GTCAGCACCGTTTCTG
Wbub n-term CCATGGGTCTTTGGAGATGATTATCCA NcoI at 5′ end
Wbub c-term GAGCTCCCCCAATAGAACTGAGAAAT SacI at 5′ end
PilY1 n-term AAATCCCATTTGAACCAGAG
PilY1 c-term GTTAACGACTGGACAGAGAAAAGG
shkR forward GAATTCCGCTGGAGGCATTGGCGGAA EcoRI at 5′ end
shkR reverse ACTAGTGACGAGGCGGTGGCACAGG SpeI at 5′ end
shkS forward GAATTCGCCGGTGCCGTCGAACTTGA EcoRI at 5′ end
shkS reverse ACTAGTCTGCACTACGCCCGCACCAA SpeI at 5′ end
Lucfor TACAACACCCCAACATCTTCGA [22]
Lucrev GGAAGTTCACCGGCGTCAT [22]
Wbub for GGCGTCTCTGTGGCCTGCG
Wbub rev GCGGCCAAATATACGCGCACC
PilY1 for GCAGCTCGAGCCTTGGCAACT
PilY1 rev CGCCCCTGTATAGCGCCGTG