TABLE 6.
SNP markers showing association with the expression levels of genes negatively correlated with fat area and their positions indicating trans-regulation
| Gene Symbol | Gene Location(Mb, SSC) | SNP | SNP Location(Mb, SSC) | Association−log10 (P) | R2a | Pb |
|---|---|---|---|---|---|---|
| AGPAT9 | 116.0 (8) | ASGA0058243 | 63.5 (13) | 6.9 | −0.28 | 4.54E-04 |
| ALDH18A1 | 112.0 (14) | ALGA0038327 | 7.3 (7) | 6.7 | −0.29 | 2.80E-04 |
| ANXA5 | 87.9 (8) | ALGA0068733 | 17.1 (13) | 6.2 | −0.33 | 4.00E-05 |
| CCL2 | 38.4 (12) | MARC0091801 | 17.6 (9) | 8.9 | −0.27 | 7.06E-04 |
| CD53 | 114.0 (4) | H3GA0055035 | 31.8 (3) | 7.2 | −0.27 | 1.00E-03 |
| IER5 | 115.0 (9) | ALGA0015640 | 112.0 (2) | 9.2 | −0.30 | 2.44E-04 |
| LOC728835 | 37.2 (12) | ALGA0003946 | 67.7 (1) | 5.4 | −0.27 | 8.65E-04 |
| PLIN2 | 213.0 (1) | DRGA0009341 | 37.6 (9) | 5.8 | −0.30 | 1.72E-04 |
| RIPK1 | 2.9 (7) | ALGA0015662 | 112.0 (2) | 5.4 | −0.32 | 7.67E-05 |
| TRAFD1 | 39.5 (14) | H3GA0001667 | 53.5 (1) | 5.4 | −0.28 | 6.26E-04 |
a
Correlation between expression and fat area.
b
P of correlation (R2).