Table 1 .
Summary of the significant eQTL
| Gene | Chr | Start, Mb | End, Mb | Size, Mb | logP | Type | Low Strains | High Strains | Status |
| A. High response to infection | |||||||||
| Gsdma | chr11 | 98.467 | 99.528 | 1.061 | 20.768 | cis | NA | NA | N |
| LOC675467 | chr14 | 20.239 | 20.648 | 0.409 | 12.766 | cis | ABD | GC | S |
| EFH | |||||||||
| Ifi27l2a | chr12 | 107.030 | 107.720 | 0.690 | 12.655 | cis | G | ABCD | S |
| EFH | |||||||||
| ENSMUSG00000052976 | chr19 | 28.681 | 30.125 | 1.444 | 12.544 | cis | FH | ABC | P |
| DEG | |||||||||
| Dst | chr1 | 33.326 | 35.180 | 1.854 | 11.943 | cis | ADEFH | BCG | F |
| Sik1 | chr17 | 34.946 | 44.196 | 9.250 | 11.529 | cis | BCEF | ADGH | P |
| AK144717 | chr19 | 3.197 | 3.819 | 0.622 | 10.535 | cis | NA | NA | N |
| NAP070792-1 | chr7 | 114.496 | 118.040 | 3.544 | 10.436 | trans | NA | NA | N |
| Senp5 | chr16 | 29.637 | 31.571 | 1.934 | 10.19 | cis | AFG | BCD | F |
| EH | |||||||||
| Kcmf1 | chr6 | 68.509 | 69.809 | 1.300 | 9.771 | cis | F | ABCDEGH | S |
| B. Low response to infection | |||||||||
| Bmpr2 | chr1 | 59.495 | 62.772 | 3.277 | 15.071 | cis | ABC | FG | F |
| DEH | |||||||||
| Tcf7l1 | chr6 | 70.215 | 76.137 | 5.922 | 14.416 | cis | FDG | ABC | F |
| EH | |||||||||
| AK078430 | chr3 | 131.067 | 133.998 | 2.931 | 13.914 | cis | FG | ABC | P |
| DEH | |||||||||
| Thnsl2 | chr6 | 67.959 | 70.668 | 2.709 | 12.832 | cis | GD | ABC | S |
| EFH | |||||||||
| AK153595 | chr17 | 5.220 | 7.352 | 2.132 | 12.013 | cis | GD | ABC | S |
| EFH | |||||||||
| D930030005Rik | chr7 | 73.676 | 77.803 | 4.127 | 11.056 | cis | ABC | FG | P |
| DEH | |||||||||
| BC022687 | chr12 | 112.813 | 114.454 | 1.641 | 11.017 | cis | BDC | AEF | S |
| GH | |||||||||
| Sh3gl3 | chr7 | 87.808 | 91.022 | 3.214 | 10.721 | cis | ABC | FG | S |
| DEH | |||||||||
| Clec16a | chr16 | 6.328 | 10.873 | 4.545 | 10.446 | cis | B | ACDE | S |
| FGH | |||||||||
| Pde7a | chr3 | 26.126 | 27.769 | 1.643 | 10.358 | cis | ABC | F | F |
| DEGH | |||||||||
| 1190007I07Rik | chr10 | 76.093 | 84.837 | 8.744 | 10.011 | cis | NA | NA | N |
An eQTL support interval (NCBI37/mm9) is defined by a 1.5 LOD drop from the maximum LOD score at the marker with the maximum –log10 P-value (logP column). Type indicates whether the eQTL was on the same chromosome as the gene (cis) or not (trans). The low strain column indicates those strains that had lower allele effects relative to the strains in the high strain column. Strains were one of A (A/J), B (C57BL/6J), C (129S1/SvImJ), D (NOD/ShiLtJ), E (NZO/HILtJ), F (CAST/EiJ), G (PWK/PhJ) and H (WSB/EiJ) or NA indicating not applicable. The status column indicates whether the allele effects for that eQTL were consistent (S) with the allele's effects in inbred founder strains, partially consistent (P), not tested (N), or inconsistent (F). eQTL, expression quantitative trait loci.