Table 1.
Hantavirus sequences used in this study
| Strain | Source | Capture site | Genbank ID | |||
|---|---|---|---|---|---|---|
| Country | Region | S segment | M segment | L segment | ||
| Newly isolated virus | ||||||
| Khekhtsir/AP209/2005 | A. peninsulae | Russia | Khabarovsk | AB620028 | AB620029 | AB620030 |
| Galkino/AA57/2002 | A. agrarius | Russia | Khabarovsk | AB620031 | AB620032 | AB620033 |
| Amur virus | ||||||
| Solovey/AP61/1999 | A. peninsulae | Russia | Primorsky | AB071183 | –* | – |
| Solovey/AP63/1999 | A. peninsulae | Russia | Primorsky | AB071184 | – | – |
| AP1371 | A. peninsulae | Russia | Khabarovsk | AF427324 | – | – |
| AP1168 | A. peninsulae | Russia | Khabarovsk | AF427323 | – | – |
| AP708 | A. peninsulae | Russia | Khabarovsk | AF427322 | – | – |
| H5 | Human | China | Heilongjiang | AB127996 | AB127993 | |
| B78 | Human | China | Shandong | AB127997 | AB127994 | – |
| Liu | Human | China | Shandong | AF288649 | AF288648 | – |
| JilinAP06 | A. peninsulae | China | Jilin | EF121324 | EF371454 | – |
| SC-1 | A. peninsulae | Korea | Gangwon | AY675349 | AY675353 | DQ056292 |
| SC-2 | A. peninsulae | Korea | Gangwon | AY675350 | DQ056293 | AY675354 |
| Hantaan virus | ||||||
| AA1028 | A. agrarius | Russia | Khabarovsk | AF427318 | – | – |
| AA1719 | A. agrarius | Russia | Khabarovsk | AF427319 | – | – |
| AA2499 | A. agrarius | Russia | Khabarovsk | AF427320 | – | – |
| KHB/HFRS/Pat#A2 | Human | Russia | Khabarovsk | – | AB086620 | – |
| KHB/HFRS/Pat#A3 | Human | Russia | Khabarovsk | – | AB086619 | – |
| KHB/HFRS/Pat#A12 | Human | Russia | Khabarovsk | – | AB086621 | – |
| Bao14 | A. agrarius | China | Heilongjiang | AB127998 | AB127995 | – |
| CGHu1 | Human | China | Guizhou | EU092218 | EU092222 | – |
| S85-46 | A. agrarius | China | Sichuan | AF288659 | AF288658 | – |
| 76-118 | A. agrarius | Korea | Gyong Gi | NC_005218 | NC_005219 | NC_005222 |
| CUMC-B11 | Not known | Korea | U37768 | U38117 | – | |
| CFC94-2 | Human | Korea | X95007 | – | – | |
| Maaji-2 | Human | Korea | AF321095 | – | – | |
| Q32 | A. agrarius | China | Guizhou | AB027097 | DQ371905 | DQ371906 |
| CGAa4MP9 | A. agrarius | China | Guizhou | EF990915 | EF990929 | – |
| 84FLi | A. agrarius | China | Shaanxi | AY017064 | AF345636 | AF336826 |
| A9 | A. agrarius | China | Jiangsu | AF329390 | AF035831 | AF293665 |
| Z10 | Human | China | Zhejiang | NC_006433 | NC_006437 | NC_006435 |
| Seoul virus | ||||||
| SR-11 | Rattus norvegicus | Japan | Hokkaido | M34881 | M34882 | – |
| 80-39 | R. norvegicus | Korea | Seoul | NC_005236 | NC_005237 | NC_005238 |
| Puumala virus | ||||||
| Sotkamo | Myodes glareolus | Finland | NC_005224 | NC_005223 | NC_005225 | |
*
Not registered or not used in this study.