Table 1.

MAPPFinder analysis

Upregulated process		C	M	T	Z	Downregulated process	C	M	T	Z
6 hours after RE	Circadian rhythm	4	10	13	7.2	Oxygen transport	3	8	17	4.5
	Nucleic acid metabolism	59	1570	2905	2.7	Calcium ion transport	8	44	67	4.4
	Hearing	3	32	54	2.3	DNA repair	16	134	195	4.2
	G2/M transition of mitotic cell cycle	3	34	40	2.2	Regulation of translational initiation	5	26	30	3.6
	Anti-apoptosis	4	53	71	2.1	Di-, trivalent inorganic cation transport	8	66	102	3.0
	Transcription	38	1025	1992	2.0	Glycogen metabolism	4	24	25	2.9
18 hours after RE	Protein amino acid phosphorylation	60	383	735	4.7	Peripheral nervous system development	5	11	12	5.5
	Regulation of cell cycle	42	248	294	4.5	Glycosphingolipid biosynthesis	3	5	5	5.0
	Anti-apoptosis	12	53	71	3.5	Antigen processing, endogenous antigen via MHC class I	3	6	11	4.5
	Mitochondrion organization and biogenesis	5	15	23	3.3	Iron transport	4	10	21	4.5
	Protein-mitochondrial targeting	4	11	19	3.2	Glutamine family amino acid catabolism	4	13	19	3.7
	L-Amino-acid transport	3	7	9	3.1	Male gonad development	3	9	12	3.4
Diurnal	Regulation of transcription, DNA-dependent	46	938	1852	3.7	Regulation of protein biosynthesis	3	7	12	5.7
	Cell differentiation	7	68	109	3.6	Non-selective vesicle transport	7	57	63	3.7
	Response to stress	24	452	566	3.0	Actin cytoskeleton organization and biogenesis	3	15	23	3.5
	Hemopoiesis	3	22	28	2.9	Cell-cycle arrest	5	37	53	3.4
	Oncogenesis	14	253	282	2.4	Main pathways of carbohydrate metabolism	7	69	100	3.1
	Nucleic acid metabolism	61	1570	2905	2.3	Tricarboxylic acid cycle	3	20	23	2.8

Filtered genes (p < 0.05) were analyzed with MAPPFinder to determine the biological processes that were regulated in each comparison. C, number of genes changed; M, number of genes represented on chip in a process; T, number of genes in the Gene Ontology (GO) process: Z, significance Z-score value. The top six, non-redundant GO terms are shown for each comparison