Table 2.
Precursors of conserved and novel miRNAs from globe artichoke
| miRNA | Sequence | pre-miRNA length | MFEI | Accession |
|---|---|---|---|---|
| cca-miR156a | UGACAGAAGAGAGUGAGCAC | 102 | 1.29 | JN381965 |
| cca-miR156a* | GCUCACUGCUCUAUCUGUCACC | |||
| cca-miR156b | UGACAGAAGAGAGUGAGCACA | 118 | 0.88 | GE609552 |
| cca-miR157a | UUGACAGAAGAUAGAGAGCAC | 98 | 1.20 | JN381966 |
| cca-miR160-1 | UGCCUGGCUCCCUGUAUGCCA | 96 | 1.13 | JN381967 |
| cca-miR160-2 | UGCCUGGCUCCCUGUAUGCCA | 93 | 1.00 | JN381968 |
| cca-miR164a | UGGAGAAGCAGGGUACGUGCA | 83 | 0.99 | JN381969 |
| cca-miR166d | GGAAUGUUGUCUGGCUCGAGG | 86 | 1.12 | JN381970 |
| cca-miR166d* | UCGGACCAGGCUUCAUUCCUU | |||
| cca-miR167a | UGAAGCUGCCAGCAUGAUCUGG | 218 | 0.77 | GE597437 |
| cca-miR168a | UCGCUUGGUGCAGGUCGGGAA | 118 | 0.83 | JN381971 |
| cca-miR169a-1 | CAGCCAAGGAUGACUUGCCGG | 102 | 0.94 | JN381972 |
| cca-miR169a-2 | CAGCCAAGGAUGACUUGCCGG | 99 | 0.91 | JN381973 |
| cca-miR171a | UGAUUGAGCCGUGCCAAUAUC | 92 | 0.82 | JN381974 |
| cca-miR172a | AGAAUCUUGAUGAUGCUGCAU | 79 | 1.04 | JN381975 |
| cca-miR319c | UUGGACUGAAGGGAGCUCCCU | 198 | 1.11 | JN381976 |
| cca-miR390 | AAGCUCAGGAGGGAUAGCGCC | 88 | 1.39 | JN381977 |
| cca-miR393a | UCCAAAGGGAUCGCAUUGAUCC | 142 | 0.97 | JN381978 |
| cca-miR394 | UUGGCAUUCUGUCCACCUCC | 211 | 0.81 | GE603351 |
| cca-miR395a | CUGAAGUGUUUGGGGGAACUC | 80 | 0.97 | JN381980 |
| cca-miR395b-1 | CUGAAGUGUUUGGAGGAACUC | 92 | 1.17 | JQ029164 |
| cca-miR395b-2 | CUGAAGUGUUUGGAGGAACUC | 92 | 1.04 | JQ029165 |
| cca-miR396a | UUCCACAGCUUUCUUGAACUU | 119 | 1.38 | JN381981 |
| cca-miR396a* | GUUCAAUAAAGCUGUGGGAAA | |||
| cca-miR396b | UUCCACAGCUUUCUUGAACUG | 110 | 1.04 | JN381982 |
| cca-miR398a | UGUGUUCUCAGGUCGCCCCUG | 100 | 1.15 | GE610628 |
| cca-miR408a | UGCACUGCCUCUUCCCUGGCU | 107 | 0.70 | GE605886 |
| cca-miR399a | UGCCAAAGGAGAUUUGCCCUG | 83 | 1.12 | JN381983 |
| cca-novel-1-5p | UGUCUAAGACAACUCCUUGGA | 117 | 1.17 | JN381984 |
| cca-novel-1-3p | CAAGAAGUUGUCUUAGGCAUG | |||
| cca-novel-2 | AUACGACAAAUAGAACAAAUAAAC | 71 | 0.80 | JN381985 |
| cca-novel-3 | ACGAAAACAUGUUGGUCUCACGUG | 217 | 0.78 | JN381986 |
| cca-novel-4-5p | UUGCAAGUAUCCGGAUUUAAA | 210 | 0.78 | JN381987 |
| cca-novel-4-3p | UUAAAUCCGGAUACUUGCAAC | |||
| cca-novel-5 | AAAGGGGACAAUAUCUGGUACGGU | 110 | 1.38 | JN381988 |
| cca-novel-6 | CACGAAAACAGACUGGUCUCACA | 222 | 0.94 | JN381989 |
| cca-novel-7-1 | UGAGAAGCGUAAGAAGGGAUC | 157 | 0.88 | JN381990 |
| cca-novel-7-2 | UGAGAAGCGUAAGAAGGGAUC | 98 | 0.92 | JN381991 |
| cca-novel-7-3 | UGAGAAGCGUAAGAAGGGAUC | 171 | 0.72 | JN381992 |
| cca-novel-8 | AUGGACGUGUUAUUCAUCAUGAAU | 122 | 1.15 | JN381993 |
| cca-novel-9-5p | AUCUUGUAACAUUUGAUGAUGUGG | 122 | 1.19 | JN381994 |
| cca-novel-9-3p | AUCCACGUCAUCAAAUGUUACAAG | |||
| cca-novel-10-5p | UCUUUAUGUCACGAUGUAUGAC | 255 | 0.86 | JN381995 |
| cca-novel-10-3p | CAUGCAUGGUGAUAUAAAUAGC | |||
| cca-novel-11 | GAAGUUUCAAGUGUAAAAAAGUGG | 116 | 1.58 | JN381996 |
| cca-novel-12 | UCUGAAACUCAAGAACACGUUG | 81 | 1.06 | JN381997 |
| cca-novel-13-5p | UGAAAGGAAUCAUGAACGUGA | 115 | 0.83 | JN381998 |
| cca-novel-13-3p | UCACGUCCAUUGUCCCUUUCA | |||
| cca-novel-14 | AAGCGUAAGAAGAGAUCUGAACC | 157 | 0.80 | JN381999 |
| cca-novel-15 | AUAAGGAGAGUUAAGCUGAGAAGC | 184 | 0.72 | JN382000 |
| cca-novel-16-5p | GUAAGAAGAGAUCUCCACCCUUGG | 162 | 0.84 | JN382001 |
| cca-novel-16-3p | AUCAAGGGUUCAGAUCUCUUCUU | |||
| cca-novel-17 | UAUGGUGAGAAGGGUAAGAAG | 169 | 0.90 | JN382002 |
| cca-novel-18 | UCUGGACGGUAUGCACAUGUGCAU | 140 | 1.23 | JN382003 |
| cca-novel-19 | UUCAAGAAAGCUGUGGGAAAA | 124 | 1.34 | JN382004 |
| cca-novel-20-5p | CAUGCUUGUGAUCAAAUGAUG | 179 | 0.84 | JN382005 |
| cca-novel-20-3p | UCAUUUGAUCACAAGCAUGAG | |||
| cca-novel-21 | GGUUAGGUUGAUCGGGUUGAAGAC | 98 | 0.88 | GE597304 |
| cca-novel-22-5p | UGGAAUUGGGUGCUUCGGAAGA | 116 | 0.84 | GE599895 |
| cca-novel-22-3p | UUCCGAGGCCACCCAUUCCAAC | |||
MFEI: minimal folding free energy index