Table 3.
Candidate genes for control of fruit polyphenolic content found in the apple gene prediction set (Additional File 2; figure S1).
| Symbol | Gene name | Genbank accession | Apple gene prediction | LG | Position (kb) |
|---|---|---|---|---|---|
| PAL | phenylalanine ammonia lyase | ES790093 | MDP0000191304 | 4 | 8,075 |
| MDP0000388769 | 12 | 15,419 | |||
| C4H | cinnamate 4-hydroxylase | EB139247 | MDP0000229348 | 11 | 5,193 |
| MDP0000225698 | 3 | 5,531 | |||
| HCT/HQT | hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyl transferase | AM690438 | MDP0000264424 | 9 | 27,594 |
| (artichoke HQT1) | MDP0000307780 | 17 | 19,929 | ||
| C3H | p-coumarate 3-hydroxylase | NP_850337 | MDP0000466557 | 8 | 35,073 |
| MDP0000836708 | 15 | 53,887 | |||
| CHS | chalcone synthase | AB074485 | MDP0000686661 | 9 | 16,919 |
| MDP0000686666 | 9 | 16,932 | |||
| MDP0000302905 | 14 | 26,679 | |||
| CHI | chalcone isomerase | CN946541 | MDP0000759336 | 14 | 12,382 |
| MDP0000682953 | 1 | 20,836 | |||
| MDP0000205890 | 11 | 19,398 | |||
| F3H | flavanone 3-hydroxylase | AB074486 | MDP0000704377 | 2 | 11,905 |
| MDP0000139343 | 5 | 23,797 | |||
| F3'H | flavanone 3'-hydroxylase | ACR14867 | MDP0000190489 | 6 | 26,649 |
| MDP0000286933 | 14 | 31,156 | |||
| DFR | dihydroflavonol reductase | AF117268 | MDP0000494976 | 12 | 26,022 |
| MDP0000440654 | 8 | 4,393 | |||
| ANS | anthocyanidin synthase (LDOX) | AF117269 | MDP0000360447 | 6 | 17,129 |
| UFGT | UDP-glucose flavonoid 3-O-glucosyl transferase | AF117267 | MDP0000376418 | 9 | 31,316 |
| MDP0000706999 | 7 | 14,018 | |||
| FLS | flavonol synthase | EB137300 | MDP0000260404 | 8 | 17,498 |
| LAR | leucoanthocyanidin reductase | AY830131 | MDP0000376284 | 16 | 1,536 |
| AY830132 | MDP0000140621 | 13 | 2,849 | ||
| ANR | anthocyanidin reductase (Banyuls) | DQ099803 | MDP0000243194 | 5 | 2,430 |
| MDP0000494976 | 12 | 26,022 | |||
| GT1 | glucosyl transferase | EB124403 | MDP0000146703 | 1 | 14,114 |
| MDP0000875654 | 7 | 19517 | |||
| GT2 | glucosyl transferase | EB141701 | MDP0000316379 | 14 | 16,678 |
The approximate physical position on the apple linkage group (LG) is given in kilobases (kb) from the top of the LG.