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. 2012 Feb 23;8(2):e1002391. doi: 10.1371/journal.pcbi.1002391

Table 1. The 25 most relevant relationships found for Inline graphic without noise.

P value GO term num Com size GO size In common Description
8.41e-42 9288 72 24 24 bacterial-type flagellum
9.57e-39 6826 53 37 25 iron ion transport
8.22e-38 1539 72 28 24 ciliary or flagellar motility
3.67e-35 6412 826 101 79 translation
6.51e-34 3735 826 56 54 structural constituent of ribosome
3.08e-31 3723 826 105 77 RNA binding
1.73e-29 6935 72 22 19 chemotaxis
4.30e-29 3774 72 17 17 motor activity
5.38e-29 9425 72 17 17 bacterial-type flagellum basal body
2.06e-25 19861 72 15 15 flagellum
5.61e-25 5506 53 210 31 iron ion binding
3.72e-24 19843 826 42 40 rRNA binding
6.98e-23 6811 53 79 22 ion transport
6.99e-22 30529 826 36 35 ribonucleoprotein complex
1.72e-21 5840 826 38 36 ribosome
6.62e-21 8652 247 62 32 cellular amino acid biosynthetic process
4.11e-17 5506 139 210 39 iron ion binding
6.66e-16 9055 139 116 29 electron carrier activity
7.30e-15 51539 139 98 26 4 iron, 4 sulfur cluster binding
8.22e-15 15453 300 15 15 oxidoreduction-driven active transmembrane transporter activity light-driven active transmembrane transporter activity
1.85e-13 6865 247 70 27 amino acid transport
6.13e-13 45272 300 13 13 plasma membrane respiratory chain complex I
9.19e-13 30964 300 13 13 NADH dehydrogenase complex
1.97e-12 9060 300 21 16 aerobic respiration
2.15e-12 5515 826 875 251 protein binding calmodulin binding

The “P value” or random probability, calculated with a hypergeometric test with Benjamini-Hochberg correction, of the common occurrence, or overlap, of genes in an inferred community and in a GO term for the 25 most statistically relevant relationships are listed. Also listed are the “GO term num” that distinguishes the GO term and its “Description” in the GO database, the number of genes in the GO term “GO size”, the number of genes in the inferred community “Com size”, and the number of genes they have in common “In common.” The complete set of the 239 relevant relationships found for Inline graphic, as well as the relevant relationships found for Inline graphic, are given in Dataset S7.