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. 2012 Feb 24;7(2):e30770. doi: 10.1371/journal.pone.0030770

Figure 3. Organization of the LTR-PBS region of cqgypsy_1.

Figure 3

A) The tRNA sequences inserted into the 5′LTR of the cqgypsy_1 element. The LTR sequence is colored in red, while the PBS sequence is colored in blue. The red bar indicates the duplicated sequence surrounding the putative Twin element. Each of the tRNA halves of the putative Twin is highlighted in turquoise (tRNALys) or in yellow (tRNAGlu). The PBS is depicted in blue. B) tRNAscan output showing the secondary structure of the two halves of the insertion as a cloverleaf structure. C) Local alignment results of cqgypsy_1 with the gypsy_Ele180 and gypsy_Ele185. The aligned region correspond to the 5′LTR (red)/PBS(black) boundary.