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. 2011 Nov 18;12:119. doi: 10.1186/1471-2202-12-119

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Copyright ©2011 Lindner et al; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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TRENTOOL workflow. Structure of main analysis strategies in TRENTOOL. Top left - data preparation; bottom left - comparison to surrogate data; bottom center - comparison of two conditions in one unit of observation; right column - analysis suite for group comparison. Function names for user interaction on the left of each box. Subroutines names at the bottom of shaded areas for parameter estimation (green), TE calculation (blue), shift testing (orange) and general permutation testing (yellow). Arrows indicate the passing of datasets. For details see text.