Figure 1.

The numbers of predicted targets. m and v stand for the number of mismatches and the number of valid reads, respectively. Cat. I and Cat. II are the Category I and Category II sRNA:target pairs classified by their P_v and P_m-values, respectively, as shown in Figure 2. Boxes with thin and thick edges are operations and results, respectively. ‘Reported’ means the number of miRNA:target pairs reported in literature, as summarized Supplementary Tables S1 and S2. The predicted targets in the blue dashed box are used to find combinatorially regulated targets. Cat. I and Cat. II miRNA:target pairs in this box are given in the Supplementary Tables S6–S8 and S14–S16 for the WT, xrn4 and osa data sets, respectively.