Table 3.
Some newly found sRNA targets of Oryza sativa that belong to Category I
| sRNA | Locus | M | VR | Pv | (%) | Target (cDNA) |
|---|---|---|---|---|---|---|
| miR159c | Os03g08480 | 5 | 50 | 5.2E-38 | 5.3 | rho termination factor, N-terminal domain containing protein |
| miR168b | Os01g05900 | 4.5 | 35 | 5.6E-14 | 5.5 | Core histone4 H2A/H2B/H3/H4 domain containing protein |
| miR171h | Os07g36170 | 4.5 | 392 | 0.0E+00 | 28.8 | Chitin-inducible gibberellin-responsive protein |
| miR171i | Os01g72250 | 5 | 28 | 2.2E-35 | 8.2 | Uridine 5-monophosphate synthase |
| miR171i | Os03g54100 | 5 | 50 | 7.5E-36 | 6.2 | Potassium channel protein |
| miR172d | Os04g22270 | 5 | 54 | 4.2E-72 | 5.4 | Expressed protein |
| miR172d | Os10g08580 | 5 | 319 | 0.0E+00 | 11.4 | FAD binding domain of DNA photolyase domain containing protein |
| miR319a | Os03g34280 | 4.5 | 20 | 9.9E-14 | 5.8 | Expressed protein |
| miR398a | Os06g42540 | 4.5 | 38 | 2.2E-26 | 10.1 | Expressed protein |
| miR415 | Os02g22280 | 3.5 | 18 | 4.7E-28 | 8.4 | Retrotransposon protein, unclassified |
| miR415 | Os07g42354 | 4.5 | 14 | 1.2E-24 | 5.6 | PPR repeat domain containing protein |
| miR417 | Os09g31506 | 4.5 | 37 | 4.1E-29 | 6.1 | Dihydroflavonol-4-reductase |
| miR419 | Os04g46990 | 5 | 14 | 5.0E-22 | 6.3 | cis-zeatin O-glucosyltransferase |
| miR439a-j | Os04g47820 | 4.5 | 19 | 2.5E-10 | 14.4 | Expressed protein |
| miR444bc-1 | Os03g23050 | 4.5 | 17 | 3.1E-26 | 11.4 | Expressed protein |
| miR444bc-1 | Os07g32460 | 4 | 48 | 1.5E-46 | 6.9 | src homology-3 domain protein 3 |
| miR444bc-2 | Os02g35480 | 4.5 | 26 | 4.6E-42 | 6.3 | Expressed protein |
| miR446 | Os09g27500 | 5 | 19 | 4.8E-42 | 22.1 | Cytochrome P450 |
| miR446 | Os09g30050 | 4 | 19 | 3.6E-34 | 27.9 | Expressed protein |
| miR528 | Os06g01720 | 3.5 | 17 | 1.3E-23 | 15.0 | Expressed protein |
| miR530-3p | Os01g52920 | 5 | 178 | 8.2E-294 | 7.7 | Expressed protein |
| miR530-3p | Os05g02420 | 4.5 | 108 | 1.8E-181 | 7.4 | Expressed protein |
| miR530-3p | Os05g34720 | 3.5 | 287 | 0.0E+00 | 25.5 | Transcriptional regulator |
| miR807a-c | Os02g26660 | 5 | 23 | 6.0E-20 | 9.0 | Exonuclease |
| miR808 | Os10g26720 | 2.5 | 44 | 8.2E-40 | 12.9 | Exonuclease |
| miR809a-h | Os02g29140 | 1.5 | 18 | 2.8E-29 | 12.1 | Ankyrin, putative, expressed |
| miR809a-h | Os04g45665 | 3 | 19 | 1.3E-24 | 28.8 | Expressed protein |
| miR810b-1 | Os12g02040 | 5 | 33 | 3.3E-39 | 5.0 | Hypoxia-responsive family protein |
| miR818a-e | Os12g31860 | 4.5 | 12 | 3.4E-21 | 31.6 | Ureide permease |
| miR1319 | Os06g01304 | 5.5 | 436 | 0.0E+00 | 20.2 | Spotted leaf 11 |
| miR1423b | Os01g19270 | 5 | 16 | 1.1E-39 | 50.0 | Expressed protein |
| miR1428bcd | Os10g26600 | 3.5 | 15 | 1.7E-11 | 12.9 | Soluble inorganic pyrophosphatase |
| miR1429-3p | Os01g50690 | 4 | 58 | 6.6E-53 | 7.6 | WD domain, G-beta repeat domain containing protein |
| miR1436 | Os01g01520 | 4.5 | 16 | 1.6E-22 | 5.4 | Transferase family protein |
| miR1436 | Os07g22930 | 3 | 27 | 1.3E-20 | 2.3 | Starch synthase |
| miR1437 | Os07g36140 | 5 | 30 | 1.3E-13 | 12.5 | Core histone H2A/H2B/H3/H4 |
| miR1438 | Os06g07100 | 5 | 10 | 1.5E-11 | 11.5 | RING-H2 finger protein |
| miR1439 | Os03g11490 | 4.5 | 62 | 7.9E-88 | 20.7 | Expressed protein |
| miR1851 | Os08g03630 | 5 | 24 | 5.5E-42 | 8.1 | Acyl-activating enzyme 14 |
| miR1852 | Os02g27400 | 4 | 188 | 0.0E+00 | 18.7 | OsFBX49 - F-box domain containing protein |
| miR1857-3p | Os05g33710 | 5 | 53 | 1.1E-60 | 6.4 | WD domain, G-beta repeat domain containing protein |
| miR1857-5p | Os11g03720 | 4.5 | 25 | 5.4E-23 | 16.0 | Expressed protein |
| miR1858ab | Os06g45340 | 4 | 28 | 3.9E-18 | 5.7 | Peptidyl-prolyl cis-trans isomerase, FKBP-type |
| miR1861ekm | Os10g32810 | 5 | 16 | 4.1E-24 | 7.1 | Beta-amylase |
| miR1862d | Os07g22930 | 4 | 9 | 6.2E-05 | 0.8 | Starch synthase |
| miR1872 | Os02g48790 | 5.5 | 99 | 1.0E-123 | 4.9 | AML1, putative, expressed |
| miR2099-5p | Os03g55164 | 4.5 | 123 | 3.2E-81 | 10.0 | OsWRKY4 - Superfamily of TFs having WRKY and zinc finger domains |
| miR2123a-c | Os02g34950 | 1 | 54 | 4.6E-83 | 9.0 | ATP binding protein, putative, expressed |
| miR2862 | Os08g01710 | 4.5 | 19 | 9.4E-26 | 10.7 | GLTP domain containing protein |
| miR2863b | Os04g46730 | 4.5 | 12 | 4.9E-17 | 5.4 | Thioesterase family protein |
| miR2874 | Os12g44350 | 5 | 34 | 1.2E-42 | 7.8 | Actin |
| miR2878-3p | Os02g40900 | 5.5 | 180 | 2.5E-318 | 37.7 | RNA recognition motif containing protein |
| miR2878-5p | Os03g07110 | 5.5 | 18 | 1.3E-46 | 30.0 | Calmodulin-binding protein |
| miR2878-5p | Os11g19100 | 5 | 87 | 1.4E-101 | 5.2 | Retrotransposon protein |
| miR2925 | Os08g03590 | 3.5 | 38 | 9.2E-54 | 10.2 | Expressed protein |
| miR2926 | Os07g33660 | 4 | 43 | 3.1E-51 | 6.3 | Expressed protein |
| miR2926 | Os05g29020 | 4 | 25 | 9.1E-49 | 10.5 | Expressed protein |
| miR2929 | Os03g19240 | 4.5 | 17 | 5.1E-24 | 4.6 | AMP-binding enzyme, putative, expressed |
| miR2930 | Os02g44870 | 4.5 | 73 | 2.7E-34 | 2.6 | Dehydrin, putative, expressed |
| miR2931 | Os10g30951 | 3.5 | 36 | 1.5E-35 | 1.5 | Expressed protein |
For details refer to the legend of Table 2.