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. 2011 Dec 14;12:103. doi: 10.1186/1471-2156-12-103

Table 2.

SNP marker associations and estimated effects for ADFI and ADG in the discovery population of crossbred steers.

Average Daily Feed Intake (ADFI) Average Daily Gain (ADG)
Marker1 Gene2 Position3 IUB # Genotypes4 MAF Effect5 P-value Correction6 Effect P-value Correction
ARS-BFGL-NGS-77584 37855236 R 1182 G = 0.10 -0.026 0.8 NS -0.0078 0.7 NS
After2Run10KSet7323 37856744 Y 1075 T = 0.30 -0.14 0.01 NS -0.029 0.01 NS
Hapmap31601-BTC-034240 37859827 R 1076 G = 0.28 -0.15 0.005 NS -0.033 0.004 NS
Hapmap28705-BTC-034230 37862818 S 1090 G = 0.31 -0.14 0.010 NS -0.033 0.003 NS
Hapmap25169-BTC-034210 37870369 R 1186 A = 0.30 -0.15 0.006 NS -0.033 0.003 NS
Hapmap30444-BTC-052947 37875093 Y 1164 C = 0.49 0.16 0.004 NS 0.036 0.002 NS
After2Run10KSet5598 37875791 Y 1186 C = 0.30 -0.14 0.01 NS -0.032 0.004 NS
Hapmap32743-BTC-052998 37879284 R 1011 A = 0.23 -0.073 0.2 NS -0.024 0.04 NS
Hapmap23977-BTC-053017 37880952 M 1176 A = 0.30 -0.15 0.006 NS -0.032 0.005 NS
79140_312 LAP3 37964162 INDEL 1165 DEL = 0.09 0.11 0.2 NS -0.013 0.5 NS
Hapmap56977-ss46527055 LAP3 37967630 R 1192 A = 0.13 -0.051 0.5 NS -0.013 0.4 NS
79152_265 LAP3 37977863 Y 1181 C = 0.33 -0.020 0.7 NS -0.021 0.05 NS
79154_194 LAP3 37979109 Y 1078 T = 0.38 -0.0072 0.9 NS -0.021 0.06 NS
79154_347 LAP3 37979262 S 1098 C = 0.34 -0.022 0.7 NS -0.021 0.04 NS
79158_103 LAP3 37984197 S 1193 G = 0.34 0.026 0.6 NS 0.021 0.05 NS
79158_104 LAP3 37984198 R 1190 G = 0.33 -0.021 0.7 NS -0.020 0.07 NS
79160_105 LAP3 37985986 Y 1127 T = 0.34 -0.0086 0.9 NS -0.019 0.08 NS
79162_241 LAP3 37986804 K 1124 T = 0.37 -0.0064 0.9 NS -0.22 0.05 NS
79162_246 LAP3 37986809 Y 1197 C = 0.34 -0.020 0.7 NS -0.21 0.04 NS
ARS-BFGL-NGS-44699 38011603 S 1183 C = 0.10 -0.085 0.3 NS -0.021 0.2 NS
BTA-100891 38076964 Y 1063 T = 0.26 -0.083 0.1 NS -0.028 0.008 NS
83704_2347 NCAPG 38157198 R 1085 A = 0.42 0.18 0.0006 0.03 0.046 2.E-05 0.0009
83704_366 NCAPG 38157330 R 1187 G = 0.12 -0.11 0.2 NS -0.013 0.4 NS
83708_361 NCAPG 38158932 Y 1092 C = 0.41 0.17 0.001 0.05 0.045 4.E-05 0.002
83712_1687 NCAPG 38163729 R 1004 G = 0.47 -0.16 0.003 NS -0.045 9.E-05 0.004
83714_2247 NCAPG 38164403 K 1132 G = 0.34 0.21 8.E-05 0.004 0.059 1.E-07 5.E-06
83724_658 NCAPG 38180790 Y 1100 C = 0.41 0.17 0.001 0.05 0.045 5.E-05 0.002
83730_778 NCAPG 38195339 M 1022 A = 0.42 0.17 0.003 NS 0.058 1.E-06 0.00005
83732_316 NCAPG 38195743 R 1050 G = 0.42 0.14 0.008 NS 0.044 1.E-04 0.005
Hapmap24122-BTC-041153 38217816 K 1193 G = 0.35 0.22 1.E-05 0.0005 0.059 2.E-08 9.E-07
Hapmap24041-BTC-041151 38220879 K 1192 T = 0.35 0.22 1.E-05 0.0005 0.059 2.E-08 9.E-07
Hapmap31609-BTC-041148 38223329 R 1192 A = 0.38 0.17 0.0005 0.02 0.045 1.E-05 0.0005
Hapmap28154-BTC-0411348 LCORL 38228679 R 935 C = 0.38 0.18 0.0003 0.01 0.045 2.E-05 0.0009
Hapmap27082-BTC-041131 LCORL 38233962 R 1121 G = 0.37 0.18 0.0002 0.009 0.047 4.E-06 0.0002
Hapmap26855-BTC-041123 LCORL 38239191 R 1075 G = 0.33 0.21 8.E-05 0.004 0.058 1.E-07 5.E-06
Hapmap23341-BTC-041113 LCORL 38250098 K 1161 T = 0.36 0.21 4.E-05 0.002 0.056 1.E-07 5.E-06
81441_243 LCORL 38255270 S 822 G = 0.28 -0.24 5.E-06 0.0002 -0.058 2.E-07 9E-06
81435_188 LCORL 38284737 Y 892 C = 0.38 0.17 0.0004 0.02 0.042 3.E-05 0.001
Hapmap28589-BTC-0410459 LCORL 38300298 S 1190 G = 0.33 0.22 2.E-05 0.0009 0.061 1.E-08 5.E-07
Hapmap33629-BTC-041038 LCORL 38313142 Y 999 T = 0.30 0.22 2.E-05 0.0009 0.059 5.E-08 2.E-06
Hapmap28835-BTC-041022 LCORL 38326993 S 1061 G = 0.18 -0.12 0.07 NS -0.027 0.04 NS
81419_461 LCORL 38342145 M 1058 C = 0.05 -0.17 0.1 NS -0.046 0.04 NS
Hapmap33694-BTC-041005 LCORL 38342183 R 1190 G = 0.16 -0.10 0.1 NS -0.038 0.005 NS
81405_2829 LCORL 38376731 M 1196 A = 0.33 0.22 2.E-05 0.0009 0.061 1.E-08 5.E-07
Hapmap33650-BTC-073421 38409471 Y 1041 C = 0.40 -0.14 0.004 NS -0.036 0.0003 0.01
Hapmap31943-BTC-050642 38427989 Y 1181 C = 0.08 -0.11 0.2 NS -0.039 0.02 NS
BTB-00249053 38481012 Y 1183 T = 0.24 -0.12 0.03 NS -0.029 0.01 NS

1 Name of publicly available markers from the following references: Van Tassell CP et al. [26], Bovine HapMap Consortium et al. [27], and Bovine Genome Sequencing and Analysis Consortium et al. [28]

2 SNP located within a gene locus are presented in this column. The gene loci for LAP3, NCAPG, and LCORL are: 37,961,725 - 37,987,164 bp, 38,153,047-38,199,153 bp, and 38,227,955-38,378,385 bp on the Btau 4.0 genome assembly.

3 Position based on the Btau 4.0 Bovine Genome Assembly.

4 Number of genotypic calls used for statistical analysis.

5 ADFI and ADG effects are displayed as kg/d. Effects are presented for the minor allele.

6 Correction for multiple testing performed by multiplying the P-values by the number of markers tested (n = 47). NS = not significant, P-value > 0.05.

7 Markers evaluated in Setoguchi et al. [8] and Eberlein et al. [11].

8 Marker evaluated in Charolais and German Holstein population in Eberlein et al. [11].

9 Markers in bold font, Hapmap28589-BTC-041045 and 81405_282, were significantly associated with ADG in the validation population of animals (P = 0.04 and 0.03, respectively).