Table 2.
Four patterns of predicted MafB motifs
MafB binding sequence | MafB motif | ||
---|---|---|---|
tgtctatgctcag | Width | Motif | Ambiguous motif |
cttttgtgctgtt | N=8 | CTGCTGAC | [CTG]TGCT[GC]AC |
ccaaactgctgac | N=9 | TCTGCTGAC | [TAG][CTG]TGCT[GC]AC |
cgtaactgctgac | N=10 | ATCTGCTGAC | [AT][TAG][CTG]TGCT[GC]AC |
caaatttgcagac | N=11 | TATCTGCTGAC | [TA][AT][TAG][CTG]TGCT[GC]AC |
taaagttgctgaa | (N=Nucleotide) | ||
catttctgctgac | |||
aggatgtgatgac | |||
tgttgttgctcac | |||
(Underline; MARE) |
MafB motifs were extracted from 9 short MafB binding sequences containing 5’ AT-rich half-MARE(MARE) and validated by biochemical experimentations.