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. 2011 Dec 14;5(Suppl 2):S7. doi: 10.1186/1752-0509-5-S2-S7

Table 2.

Four patterns of predicted MafB motifs

MafB binding sequence MafB motif
tgtctatgctcag Width Motif Ambiguous motif
cttttgtgctgtt N=8 CTGCTGAC [CTG]TGCT[GC]AC
ccaaactgctgac N=9 TCTGCTGAC [TAG][CTG]TGCT[GC]AC
cgtaactgctgac N=10 ATCTGCTGAC [AT][TAG][CTG]TGCT[GC]AC
caaatttgcagac N=11 TATCTGCTGAC [TA][AT][TAG][CTG]TGCT[GC]AC
taaagttgctgaa (N=Nucleotide)
catttctgctgac
aggatgtgatgac
tgttgttgctcac
(Underline; MARE)

MafB motifs were extracted from 9 short MafB binding sequences containing 5’ AT-rich half-MARE(MARE) and validated by biochemical experimentations.