Table 2.
True discoveries in at least eight replicates with optimal cluster numbers
| Gene | SNP | MAF | β |
|---|---|---|---|
| F = 10, TP = 10, FP = 2, FDP = 17% | |||
| ARNT | C1S6561 | 0.000717 | 0.65721 |
| KDR | C4S1877 | 0.000717 | 1.07706 |
| KDR | C4S1879 | 0.000717 | 0.61830 |
| KDR | C4S1889 | 0.000717 | 0.94133 |
| VEGFC | C4S4935 | 0.000717 | 1.35726 |
| VEGFA | C6S2981 | 0.002152 | 1.20645 |
| FLT1 | C13S431 | 0.017217 | 0.74136 |
| FLT1 | C13S522 | 0.027977 | 0.61830 |
| FLT1 | C13S523 | 0.066714 | 0.64997 |
| FLT1 | C13S524 | 0.004304 | 0.62223 |
| F = 9, TP = 15, FP = 2, FDP = 12% | |||
| ELAVL4 | C1S3181 | 0.000717 | 0.76911 |
| ELAVL4 | C1S3182 | 0.000717 | 0.30432 |
| ARNT | C1S6533 | 0.011478 | 0.56190 |
| FLT1 | C13S399 | 0.000717 | 0.39602 |
| FLT1 | C13S479 | 0.000717 | 0.75946 |
| F = 8, TP = 19, FP = 4, FDP = 17% | |||
| KDR | C4S1873 | 0.000717 | 0.58301 |
| KDR | C4S1884 | 0.020803 | 0.29558 |
| FLT4 | C5S5156 | 0.000717 | 0.43010 |
| FLT1 | C13S505 | 0.000717 | 0.44850 |
The items in the bolded rows are the frequency of detection over the 10 replicates (F), the number of true positives (TP), the number of false positives (FP), and the proportion of false discovery (FDP) in each case.