Table 1.
Distribution of minor allele frequencies of SNPs in the genes studied
Genes | SNPs | MAF < 0.005 | 0.005 < MAF < 0.01 | 0.01 < MAF < 0.05 | 0.05 < MAF < 0.5 | Total | |||||
---|---|---|---|---|---|---|---|---|---|---|---|
Q1 | Q2 | Q1 | Q2 | Q1 | Q2 | Q1 | Q2 | Q1 | Q2 | ||
Causal | Noncausal | 60 | 100 | 5 | 9 | 12 | 15 | 9 | 15 | 86 | 139 |
Causal | 32 | 61 | 0 | 5 | 5 | 4 | 2 | 2 | 39 | 72 | |
Noncausal | Noncausal | 1,422 | 532 | 189 | 57 | 295 | 90 | 288 | 80 | 2,194 | 759 |
The Q1 causal genes are ARNT, ELAVL4, FLT1, FLT4, HIF1A, HIF3A, KDR, VEGFA, and VEGFC. The Q2 causal genes are BCHE, GCKR, INSIG1, LPL, PDGFD, PLAT, RARB, SIRT1, SREBF1, VLDLR, VNN1, VNN3, and VWF. The noncausal genes are all genes on chromosomes 12, 21, and 22 for Q1 and all genes on chromosomes 21 and 22 for Q2.