Table 1.
IBD filtering in phenotype file 1
| Individuals | Genes shared | Total SNPs | Rare SNPs (MAF < 0.1) | Synonymous | Non-synonymous |
|---|---|---|---|---|---|
| +2 | 3,205 | 24,488 | 21,605 | 12,611 | 8,994 |
| +3 | 3,193 | 24,353 | 21,482 | 12,528 | 8,954 |
| +4 | 3,193 | 24,353 | 21,482 | 12,528 | 8,954 |
| +5 | 3,020 | 23,531 | 20,730 | 12,104 | 8,626 |
| +6 | 3,018 | 23,529 | 20,730 | 12,104 | 8,626 |
| +7 | 2,985 | 23,336 | 20,553 | 11,995 | 8,558 |
| +8 | 2,940 | 23,149 | 20,383 | 11,872 | 8,511 |
| +9 | 2,924 | 23,056 | 20,308 | 11,830 | 8,478 |
| +10 | 2,861 | 22,852 | 20,132 | 11,730 | 8,402 |
| +11 | 2,844 | 22,741 | 20,035 | 11,667 | 8,368 |
| +12 | 2,635 | 21,353 | 18,844 | 11,026 | 7,818 |
| +13 | 2,564 | 20,914 | 18,451 | 10,815 | 7,636 |
| +14 | 2,352 | 19,805 | 17,550 | 10,315 | 7,235 |
| +15 | 2,221 | 18,654 | 16,554 | 9,731 | 6,823 |
| +16 | 2,004 | 16,837 | 15,005 | 8,807 | 6,198 |
| +17 | 1,780 | 15,433 | 13,748 | 8,085 | 5,663 |
| +18 | 1,665 | 4,358 | 12,821 | 7,551 | 5,270 |
| +19 | 1,532 | 13,125 | 11,709 | 6,868 | 4,841 |
| +20 | 1,386 | 12,106 | 10,786 | 6,336 | 4,450 |
| +21 | 1,236 | 10,857 | 9,676 | 5,681 | 3,995 |
| +22 | 1,062 | 9,332 | 8,327 | 4,871 | 3,456 |
| +23 | 906 | 8,133 | 7,280 | 4,251 | 3,029 |
| +24 | 709 | 6,470 | 5,811 | 3,393 | 2,418 |
| +25 | 622 | 5,520 | 4,959 | 2,858 | 2,101 |
| +26 | 531 | 4,705 | 4,229 | 2,441 | 1,788 |
| +27 | 450 | 4,352 | 3,911 | 2,258 | 1,653 |
| +28 | 284 | 2,857 | 2,580 | 1,490 | 1,090 |
| +29 | 195 | 2,090 | 1,903 | 1,100 | 803 |
| +30 | 120 | 1,666 | 1,528 | 893 | 635 |
| +31 | 51 | 867 | 789 | 452 | 337 |
| +32 | 24 | 460 | 424 | 249 | 175 |
| +33 | 1 | 16 | 16 | 12 | 4 |
| +34 | 1 | 16 | 16 | 12 | 4 |
| +35 | 0 | 0 | 0 | 0 | 0 |
Highlighted bold rows indicate the “most cases” and “max cases” respectively.