Table 4.
Candidate genes and variants
| IBD analysis | FBAT analysis | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Gene | Number of phenotype files | Marker | MAF | Chromosome | Position | Gene | SNP type | Allele | FBAT p-value |
| APOB | 87 | C2S192 | 0.079627 | 2 | 21078786 | APOB | Nonsynonymous | T | 0.015 |
| APOB | 87 | C2S193 | 0.041607 | 2 | 21078990 | APOB | Nonsynonymous | G | 0.047 |
| TTLL4 | 67 | C2S6005 | 0.033716 | 2 | 219311896 | TTLL4 | Nonsynonymous | A | 0.035 |
| ACCN4 | 68 | C2S6142 | 0.008608 | 2 | 220105317 | ACCN4 | Nonsynonymous | A | 0.031 |
| COL6A3 | 72 | C2S7528 | 0.078192 | 2 | 237926760 | COL6A3 | Nonsynonymous | A | 0.029 |
| TG | 88 | C8S4237 | 0.083931 | 8 | 133969677 | TG | Nonsynonymous | A | 0.046 |
| TG | 88 | C8S4289 | 0.01363 | 8 | 133979643 | TG | Nonsynonymous | A | 0.030 |
| TG | 88 | C8S4456 | 0.040172 | 8 | 134022858 | TG | Nonsynonymous | G | 0.014 |
| TG | 88 | C8S4457 | 0.040172 | 8 | 134022922 | TG | Nonsynonymous | C | 0.014 |
| TG | 88 | C8S4475 | 0.012195 | 8 | 134030339 | TG | Nonsynonymous | G | 0.033 |
| TG | 88 | C8S4540 | 0.096844 | 8 | 134050942 | TG | Nonsynonymous | C | 0.041 |
| TG | 88 | C8S4594 | 0.02726 | 8 | 134093337 | TG | Nonsynonymous | G | 0.044 |