Table 1.
Marker name, gene homology, total number of SNPs, and number of transitions and transversions obtained in the sequenced region of the gene
| SNP marker * | Gene homology | Sequenced region (bp) | Number of SNPs | Number of transitions | Number of transversions |
|---|---|---|---|---|---|
| Xibmsp01 | Ribosomal protein S17 putative | 160 | 1 | 0 | 1 |
| Xibmsp02 | Coproporphyrinogen III oxidase | 350 | 2 | 1 | 1 |
| Xibmsp03 | CorA-like Mg2+ transporter protein | 350 | 3 | 2 | 1 |
| Xibmsp04 | Hypothetical protein | 425 | 5 | 5 | 0 |
| Xibmsp05 | Elongation factor TS | 625 | 6 | 4 | 2 |
| Xibmsp06 | HCO3 transporter family | 320 | 2 | 1 | 1 |
| Xibmsp07 | Serine carboxypeptidase III precursor | 710 | 1 | 1 | 0 |
| Xibmsp08 | Serine carboxypeptidase | 200 | 2 | 0 | 2 |
| Xibmsp09 | Uridylate kinase | 680 | 6 | 4 | 2 |
| Xibmsp10 | Phosphatidylinositol 3-kinase | 400 | 4 | 3 | 1 |
| Xibmsp11 | Acetyl CoA carboxylase | 600 | 1 | 1 | 0 |
| Xibmsp12 | Acyl CoA oxidase | 740 | 2 | 2 | 0 |
| Xibmsp13 | Potassium transporter | 780 | 1 | 1 | 0 |
| Xibmsp14 | Serine-threonine protein kinase | 690 | 1 | 1 | 0 |
| Xibmsp15 | Zinc finger C- × 8-C × 5-C × 3-H type | 620 | 2 | 2 | 0 |
| Xibmsp16 | Pitrilysin | 520 | 3 | 2 | 1 |
| Xibmsp17 | MAP kinase | 500 | 1 | 0 | 1 |
| Xibmsp18 | CBL interacting protein kinase | 580 | 4 | 2 | 2 |
| Xibmsp19 | 2-oxoglutarate dehydrogenase E1 component | 530 | 2 | 1 | 1 |
| Xibmsp20 | Succinyl-CoA ligase alpha subunit | 590 | 4 | 3 | 1 |
| Xibmsp21 | Hypothetical protein | 300 | 3 | 1 | 2 |
| Xibmsp22 | LHY | 570 | 14 | 6 | 8 |
| Xibmsp23 | Hypothetical protein | 200 | 2 | 0 | 2 |
| Xibmsp24 | Ubiquitin conjugating enzyme | 460 | 2 | 2 | 0 |
| Xibmsp25 | Proteasome a-type and b-type | 500 | 1 | 1 | 0 |
| Xibmsp26 | Catalase | 270 | 4 | 4 | 0 |
| Xibmsp27 | Alanine glyoxylate aminotransferase | 880 | 23 | 9 | 14 |
| Xibmsp28 | Glutaredoxin | 750 | 4 | 3 | 1 |
| Xibmsp29 | Delta-1-pyrroline-5-carboxylate synthetase | 680 | 1 | 1 | 0 |
| Xibmsp30 | FlO | 330 | 1 | 1 | 0 |
| Xibmsp31 | HD3 | 370 | 1 | 1 | 0 |
| Xibmsp32 | Alcohol dehydrogenase 1 | 370 | 1 | 0 | 1 |
| Xibmsp33 | ABA response protein | 470 | 3 | 2 | 1 |
| Xibmsp34 | MADS-box | 330 | 1 | 1 | 0 |
| Xibmsp35 | MYC | 370 | 1 | 1 | 0 |
| Xibmsp36 | Opaque 2 | 370 | 1 | 1 | 0 |
| Xibmsp37 | LEA | 510 | 6 | 4 | 2 |
| Xibmsp38 | Vacuolar H+ ATPase subunit c | 900 | 4 | 2 | 2 |
| Xibmsp39 | RAB | 470 | 1 | 1 | 0 |
| Xibmsp40 | Anion channel protein | 280 | 4 | 3 | 1 |
| Xibmsp41 | Hydroxyproline rich-glycoprotein | 370 | 1 | 1 | 0 |
| Xibmsp42 | Expressed protein | 500 | 3 | 2 | 1 |
| Xibmsp43 | Actin depolymerising factor | 650 | 8 | 7 | 1 |
| Xibmsp44 | Photolyase | 750 | 3 | 2 | 1 |
| Xibmsp45 | Expressed protein | 200 | 4 | 4 | 0 |
| Xibmsp46 | Plectin/s10 domain | 400 | 12 | 5 | 7 |
| Xibmsp47 | Hypothetical protein | 650 | 8 | 5 | 3 |
| Xibmsp48 | Thioredoxin peroxidase | 830 | 2 | 1 | 1 |
| Xibmsp49 | Atftsh2/8 | 540 | 4 | 2 | 2 |
| Xibmsp50 | Fatty acid desaturase | 320 | 1 | 1 | 0 |
| Xibmsp51 | Hypothetical protein | 320 | 5 | 4 | 1 |
| Xibmsp52 | Expressed protein | 310 | 13 | 6 | 7 |
| Xibmsp53 | PSI reaction center subunit III | 180 | 1 | 1 | 0 |
| Xibmsp54 | Eucaryotic initiation factor 4A | 750 | 1 | 1 | 0 |
| Xibmsp55 | PHYC | 350 | 3 | 1 | 2 |
| Xibmsp56 | Elongation factor | 320 | 1 | 1 | 0 |
| Xibmsp57 | Zn finger WRKY | 360 | 1 | 1 | 0 |
| Xibmsp58 | Fe-S precursor protein | 440 | 1 | 1 | 0 |
| Xibmsp59 | Ycf68 | 420 | 1 | 0 | 1 |
| Xibmsp60 | Dipeptidyl peptidase IV | 750 | 3 | 3 | 0 |
| Xibmsp61 | Peroxidase | 380 | 6 | 4 | 2 |
| Xibmsp62 | Actin | 530 | 9 | 5 | 4 |
| Xibmsp63 | AMP deaminase | 360 | 6 | 3 | 3 |
*The sequences of forward and reverse primers are provided in the supplementary Additional file 1: Table S1