Table 1.
Novel transcript contigs in brain and cell lines.
| Items | Brain | Cell lines |
|---|---|---|
| Total number of transcript contigs | 254769 | 204625 |
| Number of contigs unaligned to GRCh37, RefSeq genes and EST | 16225 | 11638 |
| Number of unmapped contigs aligned to Human Fosmid sequences | 41 | 25 |
| Number of unmapped contigs aligned to HuRef genome | 184 | 100 |
| Number of unmapped contigs aligned to Celera genome | 181 | 90 |
| Number of unmapped conitgs aligned to YH novel sequences | 103 | 42 |
| Number of unmapped contigs aligned to NA18507 novel sequences | 137 | 46 |
| Number of unmapped contigs aligned to chimpanzee genome | 119 | 56 |
| Number of unmapped contigs aligned to macaque genome | 64 | 36 |
| Total number of aligned unmapped contigs | 313 | 173 |
| Total contig length (bp) | 50324 | 29664 |
| N50 contig size (bp) | 195 | 194 |
*The brain and cell line transcript contigs were aligned to the human reference genome (GRCh37), RefSeq genes and EST sequences with 90% indentify and 90% coverage as threshold. The unalignable brain and cell line transcript contigs were then aligned to human Fosmid sequences, HuRef genome, Celera genome, Asian (YH) and African (NA18507) novel sequences, chimpanzee and macaque genomes with 90% identity and 100% coverage as the threshold.