Table 4. Minor allele frequency, expected heterozygosity, and inbreeding coefficient (F_IS) for select loci in three Pacific herring populations.

	Minor Allele Frequency			Expected Heterozygosity			Inbreeding Coefficient (FIS)
Loci ID	Kodiak	PWS	Togiak	Kodiak	PWS	Togiak	Kodiak	PWS	Togiak
Cpa_28881	0.29	-	0.23	0.42	NA	0.36	−0.05	NA	−0.12
Cpa_RG9MTD2	0.33	-	0.21	0.45	NA	0.34	0.17	NA	0.47
Cpa_ABCG5	0.26	0.23	0.01	0.39	0.35	0.01	−0.04	−0.17	0
Cpa_SOX11	0.22	0.25	0.01	0.34	0.37	0.01	−0.08	0.15	0
Cpa_24210	0.25	0.27	0.02	0.37	0.4	0.04	−0.15	−0.15	0.49
Cpa_28757	0.26	0.22	0.03	0.39	0.34	0.06	−0.07	−0.08	0.32
Cpa_CYP2J5	0.13	0.14	0.38	0.23	0.25	0.47	0.43	0.55	0.16
Cpa_UGT2A	0.23	0.25	0.23	0.36	0.37	0.36	−0.21	−0.2	−0.24
Cpa_11680	0.32	0.28	0.20	0.44	0.41	0.32	−0.09	0.09	0.19
Cpa_11961	0.31	0.28	0.20	0.43	0.4	0.33	−0.05	−0.09	0.38
Cpa_PM20D1	0.28	0.25	0.12	0.41	0.37	0.21	−0.13	−0.15	−0.02
Cpa_11785	0.01	M	0.02	0.01	0	0.04	0	NA	−0.02
Cpa_UPF0669	0.20	0.19	0.17	0.32	0.31	0.28	0.11	−0.16	−0.05
Cpa_APOB	0.29	0.20	0.06	0.41	0.32	0.11	−0.18	−0.25	0.14

Numbers in bold represent values that deviated significantly from HWE.