Table 1. Assembler software recently used for de novo assembly of 454 transcriptome data.§ .
Assembler | Organism |
CAP3 [31] | Amaranthus tuberculatus [2]; Conyza canadensis [3]; Momordica charantia [4]; Oncopeltus fasciatus [5]; Oryza longistaminata [6]; Papaver somniferum * [7]; Pisum sativum * [8]; Pteridium aquilinum [9]; Trichostrongylus colubriformis [10]; |
MIRA [33] | Anguilla anguilla [11]; Bathymodiolus azoricus [12]; Cochliomyia hominivorax [13]; Cucurbita pepo [14]; Fagopyrum esculentum and F. tataricum [15]; Pisum sativum [8]; Pteridium aquilinum [9]; Schmidtea mediterranea [16]; Thamnophis elegans [17]; Trialeurodes vaporariorum * [18]; |
Newbler [35] | Agrilus planipennis [19]; Cajanus cajan [20]; Cimex lectularius [21]; Euphausia superba [22]; Oncopeltus fasciatus [5]; Paulinella chromatophora [23]; Phytoseiulus persimilis [24]; Teladorsagia circumcincta [25]; Thamnophis elegans [17]; Vigna radiata [26]; |
Seqman NGen © | Crotalus adamanteus [27]; Littorina saxatilis [28]; Oncorhynchus mykiss [29]; |
CLC bio © | Coregonus clupeaformis [30]; Tigriopus californicus [31]; |
EGassembler [36] | Amaranthus tuberculatus [2]; Conyza canadensis [3]; |