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. 2012 Feb 27;7(2):e31410. doi: 10.1371/journal.pone.0031410

Table 1. Assembler software recently used for de novo assembly of 454 transcriptome data.§ .

Assembler Organism
CAP3 [31] Amaranthus tuberculatus [2]; Conyza canadensis [3]; Momordica charantia [4]; Oncopeltus fasciatus [5]; Oryza longistaminata [6]; Papaver somniferum * [7]; Pisum sativum * [8]; Pteridium aquilinum [9]; Trichostrongylus colubriformis [10];
MIRA [33] Anguilla anguilla [11]; Bathymodiolus azoricus [12]; Cochliomyia hominivorax [13]; Cucurbita pepo [14]; Fagopyrum esculentum and F. tataricum [15]; Pisum sativum [8]; Pteridium aquilinum [9]; Schmidtea mediterranea [16]; Thamnophis elegans [17]; Trialeurodes vaporariorum * [18];
Newbler [35] Agrilus planipennis [19]; Cajanus cajan [20]; Cimex lectularius [21]; Euphausia superba [22]; Oncopeltus fasciatus [5]; Paulinella chromatophora [23]; Phytoseiulus persimilis [24]; Teladorsagia circumcincta [25]; Thamnophis elegans [17]; Vigna radiata [26];
Seqman NGen © Crotalus adamanteus [27]; Littorina saxatilis [28]; Oncorhynchus mykiss [29];
CLC bio © Coregonus clupeaformis [30]; Tigriopus californicus [31];
EGassembler [36] Amaranthus tuberculatus [2]; Conyza canadensis [3];

*Utilising a wrapper TGICL [33] or est2assmbly [35].

§

For more studies refer to Table 1 in [1].