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| CAP3 | MIRA | Newbler | |
| Non chimeric contigs absolute | 38'429/45'422 | 34'558/40'129 | 6'138/9'957 |
| Non chimeric contigs relative | 85% | 86% | 62% |
| Average proportion of misplaced reads AS | 5.27% | 4.61% | 11.70% |
| Average proportion of misplaced reads non-AS | 0.88% | 0.91% | 2.82% |
AS: Genes with alternative splicing.
Non-AS: Genes without alternative splicing.
