Table 1. Characteristics of rabies virus isolates included in the phylogenetic analysis.
| Country | Year of isolation | Species | Isolate | Virus species | Phylogroup (N) | Source reference | GenBank accession Number |
| Estonia | 1994 | Raccoon dog | Est-RV9342 | 1 | NEE | Bourhy et al. 1999 | U43432 |
| 2004 | Raccoon dog | Est-RV0204MT720 | 1 | NEE | This study | JN109225 | |
| 2004 | Raccoon dog | Est-RV0304MT745 | 1 | NEE | This study | JN109207 | |
| 2004 | Raccoon dog | Est-RV0704MT740 | 1 | NEE | This study | JN109218 | |
| 2004 | Raccoon dog | Est-RV0804MT7498 | 1 | NEE | This study | JN109219 | |
| 2004 | Raccoon dog | Est-RV0904MT724 | 1 | NEE | This study | JN109226 | |
| 2006 | Raccoon dog | Est-TR0601060MT43 | 1 | NEE | This study | JN109222 | |
| 2006 | Raccoon dog | Est-TR0600543MT30 | 1 | NEE | This study | JN109221 | |
| 2006 | Red fox | Est-TR0603044MT90 | 1 | NEE | This study | JN109227 | |
| 2006 | Raccoon dog | Est-TR0601851MT66 | 1 | NEE | This study | JN109220 | |
| 2006 | Raccoon dog | Est-TR0601755 | 1 | NEE | This study | JN109229 | |
| 2006 | Badger | Est-TR0607377 | 1 | NEE | This study | JN109230 | |
| 2006 | Raccoon dog | Est-TR0608902 | 1 | NEE | This study | JN109233 | |
| 2006 | Raccoon dog | Est-BMT4 | 1 | NEE | This study | JN109223 | |
| 2006 | Raccoon dog | Est-TR0611366 | 1 | NEE | This study | JN109231 | |
| 2006 | Red fox | Est-TR0612855 | 1 | NEE | This study | JN109232 | |
| 2006 | Raccoon dog | Est-TR0616726 | 1 | NEE | This study | JN109228 | |
| 2007 | Cattle | Est-TA0705424MT42 | 1 | NEE | This study | JN109224 | |
| 2011 | Raccoon dog | Est-RV2011-DR0359 | 1 | C | This study | JQ277471 | |
| Latvia | 1999 | Red fox | 12LAT | 1 | NEE | Vanaga et al., 2003 | AY277574 |
| 1999 | Dog | 18LAT | 1 | NEE | Vanaga et al., 2003 | AY277576 | |
| 1999 | Red fox | 20LAT | 1 | NEE | Vanaga et al., 2003 | AY277577 | |
| 1999 | Badger | 22LAT | 1 | NEE | Vanaga et al., 2003 | AY277578 | |
| Lithuania | 2006 | Raccoon dog | 06LT4 | 1 | NEE | Zienus et al., 2009 | EU616717 |
| 2006 | Dog | 06LT5 | 1 | NEE | Zienus et al., 2009 | EU616718 | |
| 2007 | Red fox | 07LT12 | 1 | NEE | Zienus et al., 2009 | EU616720 | |
| 2007 | Raccoon dog | 07LT14 | 1 | NEE | Zienus et al., 2009 | EU616721 | |
| Russia | / | Human | RV245RUS | 1 | E | Kuzmin et al., 2004 | AY352475 |
| / | Raccoon dog | RV309 RUS | 1 | E | Kuzmin et al., 2004 | AY352504 | |
| Red fox | Rv1596 RUS | 1 | E | Kuzmin et al., 2004 | AY352474 | ||
| Red fox | RV247 RUS | 1 | D | Kuzmin et al., 2004 | AY352511 | ||
| Red fox | RV299 RUS | 1 | D | Kuzmin et al., 2004 | AY352479 | ||
| Human | RV239 RUS | 1 | D | Kuzmin et al., 2004 | AY352509 | ||
| / | Red fox | 2072f RUS | 1 | C | Kuzmin et al., 2004 | AY352485 | |
| / | Human | RVHN RUS | 1 | C | Kuzmin et al., 2004 | AY352463 | |
| / | Red fox | 409f RUS | 1 | C | Kuzmin et al., 2004 | AY352489 | |
| / | Red fox | 3502f RUS | 1 | C | Kuzmin et al., 2004 | AY352455 | |
| / | Red fox | 3605f RUS | 1 | C | Kuzmin et al., 2004 | AY352467 | |
| Laboratory strains | SAG2 | 1 | Geue et al, 2008 | EF206719 | |||
| CVS | 1 | Tordo et al, 1986 | D42112 | ||||
| India | Outgroup | Jayakumar et al., 2004 | AF374721 | ||||
| China | Outgroup | 1 | Li et al. 1999 | EU159392 |
(NEE = North Eastern Europe, D = centre of the European part of Russia, E = North-Western part of Russia).