Table 3.

Allele frequencies in IBD cases and healthy controls.

SNP no.	Position in NT_02257.18*	IBD cases			Controls
		N alleles included	N variant alleles	Allele frequency in %	N alleles included	N variant alleles	Allele frequency in %
1	12332979G>T	566	0	0	364	1	0.27
2	12333068insC	566	1	0.18	364	0	0
3	12333070C>T	566	0	0	364	2	0.55
4	12333125C>G	566	60	10.60	364	50	13.74
5	12333199T>G	566	1	0.18	364	0	0
6	12333213G>A	566	0	0	364	3	0.82
7	12361272C>T	562	1	0.18	358	0	0
8	12361422A>G	562	0	0	358	1	0.28
9	12363017A>G	554	1	0.18	334	0	0
10	12374014G>T	554	1	0.18	348	0	0
11	12374024A>T	564	1	0.18	348	0	0
12	12374091C>A	554	1	0.18	348	0	0
13	12374110C>T	554	1	0.18	348	0	0
14	12374272A>T	554	1	0.18	348	1	0.29
15	12374352C>T	554	0	0	348	1	0.29
16	12387616G>A	562	1	0.18	360	0	0
17	12398613C>T	546	0	0	370	1	0.27
28	12415473G>A	546	0	0	350	1	0.29
19	12415557C>T	546	66	12.09	350	46	13.14
20	12415581G>A	546	0	0	350	1	0.29
21	12415647G>A	546	2	0.37	350	0	0
22	12415669C>T	546	0	0	350	1	0.29

no.: number; N: absolute number; *DNA reference sequence signature in NCBI.