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. 2012 Jan 11;28(5):719–720. doi: 10.1093/bioinformatics/bts015

Table 1.

Computational requirements

Method Time per iteration (min : s) Memory per node
250 000 variables
glmnet 2 : 20 46 GB
gpu-lasso (1 CPU) 0 : 54 415 MB
gpu-lasso (1 GPU) 0 : 1.85 415 MB
gpu-lasso (2 GPU) 0 : 0.93 208 MB
1 million variables
glmnet NA NA
gpu-lasso (1 CPU) 3 : 47 1.7 GB
gpu-lasso (1 GPU) 0 : 7.7 1.7 GB
gpu-lasso (2 GPU) 0 : 3.8 863 MB

A total of 7000 subjects in all analyses.