Table 2. Nearest-match identification of TTGE band sequences obtained from RNA extraction of rainbow trout intestinal microbiota with known sequences in the RDP II database.
| Closest relativea | Phylum | Class | Fish Family (x/y) | |||||||||||
| F1 | F2 | F3 | F4 | |||||||||||
| D1 | D2 | D3 | D1 | D2 | D3 | D1 | D2 | D3 | D1 | D2 | D3 | |||
| Sphingomonas sp. | Proteobacteria | Alphaproteobacteria | 2/3 | 2/3 | ||||||||||
| Ralstonia sp. | Proteobacteria | Betaproteobacteria | 3/3 | 2/3 | 3/3 | |||||||||
| Paracoccus sp. | Proteobacteria | Alphaproteobacteria | 2/3 | 1/3 | ||||||||||
| Pedobacter sp. | Bacteroidetes | Sphingobacteria | 2/3 | |||||||||||
| Cellulomonas sp. | Actinobacteria | Actinobacteria | 2/3 | |||||||||||
| Blastococcus jejuensis | Actinobacteria | Actinobacteria | 2/3 | |||||||||||
| UnculturedChelatococcus | Proteobacteria | Alphaproteobacteria | 1/3 | 1/3 | ||||||||||
| Lactobacillus aviarius | Firmicutes | Bacilli | 1/3 | |||||||||||
| Streptococcus iniae | Firmicutes | Bacilli | 3/3 | 1/3 | 4/4 | |||||||||
| Lactobacillus sp. | Firmicutes | Bacilli | 3/3 | |||||||||||
| Novosphingobium sp. | Proteobacteria | Alphaproteobacteria | 1/3 | |||||||||||
| Sinorhizobium sp. | Proteobacteria | Alphaproteobacteria | 1/3 | |||||||||||
| Delftia acidovorans | Proteobacteria | Betaproteobacteria | 4/5 | 4/5 | 4/4 | 4/4 | ||||||||
| UnculturedKocuria sp. | Actinobacteria | Actinobacteria | 4/5 | 5/5 | 1/4 | |||||||||
| UnculturedClostridium | Firmicutes | Clostridia | 1/5 | |||||||||||
| Stenotrophomonas sp. | Proteobacteria | Gammaproteobacteria | 1/5 | |||||||||||
| UnculturedAcetanaerobacterium * | Firmicutes | Clostridia | 3/5 | 2/4 | ||||||||||
| Acinetobacter sp. | Proteobacteria | Gammaproteobacteria | 1/4 | |||||||||||
| Gluconoacetobacter europaeus | Proteobacteria | Alphaproteobacteria | 1/4 | 2/3 | ||||||||||
| Photobacterium phosphoreum/Vibrio sp. | Proteobacteria | Gammaproteobacteria | 1/4 | |||||||||||
| Fusobacterium sp. | Fusobacteria | Fusobacteria | 4/4 | 1/5 | 4/4 | |||||||||
| Uncultured Rothia | Actinobacteria | Actinobacteria | 4/4 | 4/5 | 4/4 | |||||||||
| UnculturedStreptococcus | Firmicutes | Bacilli | 2/4 | 2/5 | ||||||||||
| UnculturedEscherichia/Shigella | Proteobacteria | Gammaproteobacteria | 4/4 | 4/4 | ||||||||||
| Beutenbergia sp.* | Actinobacteria | Actinobacteria | 2/4 | |||||||||||
a
:>95% identity,
*
>90% identity, F: family, D: diet, x: number of individuals with this microorganism, y: total of individuals analyzed.