Table II. Up- or down-regulated genes in aha2-4 mutant compared with wild-type plants on the complete nutrient growth condition.
Fold Change (Linear) | Pa | Identifier | Annotation |
Up-regulated genesb | |||
5.29 | 0.0183 | At3g56980 | BHLH039, basic helix-loop-helix (bHLH) DNA-binding protein |
4.97 | 0.0043 | At4g36700 | RmlC-like cupins superfamily protein |
3.89 | 0.0365 | At4g13420 | ATHAK5, high-affinity K+ transporter 5 |
3.30 | 0.0359 | At2g30750 | CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 |
2.96 | 0.0257 | At5g48850 | ATSDI1, tetratricopeptide repeat (TPR)-like superfamily protein |
2.86 | 0.0316 | At1g26410 | FAD-binding berberine family protein |
2.78 | 0.0208 | At1g47400 | Unknown protein |
2.74 | 0.0333 | At2g39510 | Nodulin MtN21, EamA-like transporter family protein |
2.72 | 0.0010 | At1g02920/30 | ATGST11, ATGSTF7, GST |
2.50 | 0.0082 | At4g37290 | Unknown protein |
2.49 | 0.0212 | At2g43590 | Chitinase family protein |
2.39 | 0.0134 | At2g02930/2520 | ATGSTF3, GST17, GST |
2.34 | 0.0300 | At5g26220 | Cha (cation/H+ antiporter) C-like family protein |
2.34 | 0.0358 | At5g57220 | CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 |
2.33 | 0.0300 | At2g46750 | d-Arabinono-1,4-lactone oxidase family protein |
2.32 | 0.0453 | At1g12030 | Protein of unknown function (DUF506) |
2.27 | 0.0080 | At1g19900 | Glyoxal oxidase-related protein |
2.17 | 0.0078 | At3g54040 | PAR1 protein |
2.16 | 0.0011 | At4g23700 | ATCHX17, CHX17, cation/H+ exchanger 17 |
2.13 | 0.0150 | At1g23020 | ATFRO3, FRO3, ferric reduction oxidase 3 |
2.10 | 0.0441 | At5g23220 | NIC3, nicotinamidase 3 |
2.01 | 0.0345 | At5g59530 | 2-Oxoglutarate (2OG) and Fe(II)-dependent oxygenase protein |
Down-regulated genesc | |||
17.64 | 0.0074 | At4g30190 | AHA2, HA2, PMA2, H+-ATPase 2 |
9.01 | 0.0332 | At3g30720 | QQS, qua-quine starch |
2.39 | 0.0440 | AtCg00180 | RPOC1, DNA-directed RNA polymerase family protein |
2.12 | 0.0380 | At3g49160 | Pyruvate kinase family protein |
2.09 | 0.0016 | At5g01600 | ATFER1, FER1, ferretin 1 |
The paired t test was used to calculate the two-tailed P value to determine statistical significance with 95% confidence.
The 22 genes that are significantly up-regulated greater than 2-fold in the aha2-4 mutant represent 0.097% of the Arabidopsis genome (22,746 probe sets).
The five genes that are significantly down-regulated greater than 2-fold in the aha2-4 mutant represent 0.018% of the Arabidopsis genome (22,746 probe sets).