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. 2012 Mar 1;2(3):379–392. doi: 10.1534/g3.111.001867

Table 3 . Descriptive statistics, including the LOD score, the position, 95% CI, PVE (%), the associated P-value, and the specific additive, and dominance effects of each QTL linked to every phenotype related to reproductive traits.

Phenotype LG Position(cM) 95% CI (cM) LOD PVE, % F Value P Value (F) Additive Effect SE Dominance Effect SE Nearest Marker
Egg diameter 11 0.0 0 - 11 5.193 10.62 4.432 0.044 −0.8930 0.0936 −0.8030 0.1345 BX-870052i
34 0.0 0 - 34 3.824 16.16 6.179 0.043 0.3635 0.0491 0.4824 0.3713 BX319411i
17β-estradiol 8 0.0 0 - 7 3.152 27.62 5.412 0.049 0.0360 0.0056 0.9562 0.1254 sf000754_AC
Sperm concentration 6 21 2 - 48 3.831 18.58 5.543 0.052 0.0257 0.0061 0.3895 0.0327 sf000891_02AC
Spermatozoid head diameter 16 42.9 37 - 42.9 5.290 14.95 9.146 0.029 −1.2260 0.0333 −0.4490 0.0190 SFO-D91

Additive and dominance effect give insight in the mode of action of the genes underlying the variance of the traits. Moreover, direction (−/+) of the dominance or additive effects indicates which parent contributes to decrease the trait the phenotypic values in the studied trait. LOD, Log10 of the odd ratio; 95% CI, 95% confidence interval; PVE, percent variance explained; QTL, quantitative trait loci; SE, standard error.