|
-dependent Arp2/3 activation rate |
|
[25]
|
|
Hill coeff. of -mediated Arp2/3 activation |
|
[25]
|
|
Threshold conc. of for Arp2/3 activation |
|
[25]
|
|
Arp2/3 decay rate |
|
[36]
|
|
Arp2/3 diffusion coefficient |
|
[93]
|
|
Arp2/3 nucleation rate |
|
[36]
|
|
saturation constant for Arp2/3 nucleation |
|
[36]
|
|
scale factor (converts units of to conc.) |
|
[36]
|
|
scale factor (converts conc. to units of ) |
|
[36]
|
|
actin filament growth rate (free polymerization) |
|
[94], [95]
|
|
actin filament turnover rate |
|
[88], [96]
|
|
barbed end capping rate |
|
[95], [97]
|
|
max reduction of capping by
|
|
[25]
|
|
reduction in capping rate near leading edge |
|
[36]
|
|
total levels of Cdc42, Rac, Rho |
|
[36], [91], [98]
|
|
Cdc42, Rac, Rho activation input rates |
|
[36], [91]
|
|
Rho level for half-max inhibition of Cdc42 |
|
[36]
|
|
Cdc42 level for half-max inhibition of Rho |
|
[36]
|
|
Hill coeff. of Cdc42-Rho mutual inhibition |
|
[36]
|
|
Cdc42-dependent Rac activation rate |
|
[36]
|
|
Rac-dependent Rho activation rate |
|
[36]
|
|
decay rates of activated Rho-proteins |
|
[99], [100]
|
|
diffusion coeff. of active, inactive Rho-proteins |
|
[62], [101]
|
|
typical basal levels of active Cdc42, Rac, Rho |
|
[36]
|
|
input rate |
|
[92]
|
|
PIP decay rate |
|
[92]
|
|
to baseline conversion rate (by PI5K) |
|
[92]
|
|
to conversion rate |
|
[92]
|
|
to baseline conversion rate (by PI3K) |
|
[92]
|
|
to baseline conversion rate (by PTEN) |
|
[92]
|
|
PI diffusion rate |
|
[101], [102]
|
|
typical basal levels of , ,
|
|
[70], [103]
|
|
coupling energy per boundary site |
|
[36]
|
|
cell inelasticity |
|
[36]
|
|
target area of the cell |
|
[36]
|
|
membrane inelasticity |
|
–– |
|
target perimeter of the cell |
|
–– |
|
membrane yield |
|
[36]
|
|
simulation “temperature” |
|
[36]
|
|
effect of Rho on contraction |
|
[36]
|
|
Rho contraction threshold |
|
[36]
|