Skip to main content
. 2012 Mar 1;8(3):e1002402. doi: 10.1371/journal.pcbi.1002402

Table 1. Parameter estimates relevant to (i) actin dynamics; (ii) Rho-proteins; (iii) phosphoinositide dynamics; and (iv) cell surface mechanics, with sources from which they were obtained.

Parameter Definition Value Source
Inline graphic Inline graphic-dependent Arp2/3 activation rate Inline graphic [25]
Inline graphic Hill coeff. of Inline graphic-mediated Arp2/3 activation Inline graphic [25]
Inline graphic Threshold conc. of Inline graphic for Arp2/3 activation Inline graphic [25]
Inline graphic Arp2/3 decay rate Inline graphic [36]
Inline graphic Arp2/3 diffusion coefficient Inline graphic [93]
Inline graphic Arp2/3 nucleation rate Inline graphic [36]
Inline graphic saturation constant for Arp2/3 nucleation Inline graphic [36]
Inline graphic scale factor (converts units of Inline graphic to conc.) Inline graphic [36]
Inline graphic scale factor (converts conc. to units of Inline graphic) Inline graphic [36]
Inline graphic actin filament growth rate (free polymerization) Inline graphic [94], [95]
Inline graphic actin filament turnover rate Inline graphic [88], [96]
Inline graphic barbed end capping rate Inline graphic [95], [97]
Inline graphic max reduction of capping by Inline graphic Inline graphic [25]
Inline graphic reduction in capping rate near leading edge Inline graphic [36]
Inline graphic total levels of Cdc42, Rac, Rho Inline graphic [36], [91], [98]
Inline graphic Cdc42, Rac, Rho activation input rates Inline graphic [36], [91]
Inline graphic Rho level for half-max inhibition of Cdc42 Inline graphic [36]
Inline graphic Cdc42 level for half-max inhibition of Rho Inline graphic [36]
Inline graphic Hill coeff. of Cdc42-Rho mutual inhibition Inline graphic [36]
Inline graphic Cdc42-dependent Rac activation rate Inline graphic [36]
Inline graphic Rac-dependent Rho activation rate Inline graphic [36]
Inline graphic decay rates of activated Rho-proteins Inline graphic [99], [100]
Inline graphic diffusion coeff. of active, inactive Rho-proteins Inline graphic [62], [101]
Inline graphic typical basal levels of active Cdc42, Rac, Rho Inline graphic [36]
Inline graphic Inline graphic input rate Inline graphic [92]
Inline graphic PIPInline graphic decay rate Inline graphic [92]
Inline graphic Inline graphic to Inline graphic baseline conversion rate (by PI5K) Inline graphic [92]
Inline graphic Inline graphic to Inline graphic conversion rate Inline graphic [92]
Inline graphic Inline graphic to Inline graphic baseline conversion rate (by PI3K) Inline graphic [92]
Inline graphic Inline graphic to Inline graphic baseline conversion rate (by PTEN) Inline graphic [92]
Inline graphic PI diffusion rate Inline graphic [101], [102]
Inline graphic typical basal levels of Inline graphic, Inline graphic, Inline graphic Inline graphic [70], [103]
Inline graphic coupling energy per boundary site Inline graphic [36]
Inline graphic cell inelasticity Inline graphic [36]
Inline graphic target area of the cell Inline graphic [36]
Inline graphic membrane inelasticity Inline graphic ––
Inline graphic target perimeter of the cell Inline graphic ––
Inline graphic membrane yield Inline graphic [36]
Inline graphic simulation “temperature” Inline graphic [36]
Inline graphic effect of Rho on contraction Inline graphic [36]
Inline graphic Rho contraction threshold Inline graphic [36]

Note citations of our earlier works (i.e. [25], [36], [91][93]), where many detailed derivations, explanations, and references can be found.