Table 3. The performance of the final WaterDock method on the second validation set.

	Max Error  = 1.5 Å			Max Error  = 2.0 Å
Maximum distance of experimental waters from protein (Å)	Consensus water molecules predicted (%)	False Positives (%)	Mean Error (Å)	Consensus water molecules predicted (%)	False Positives (%)	Mean Error (Å)
3	88	24	0.69	94	16	0.77
3.3	81	24	0.69	88	16	0.78