. Author manuscript; available in PMC: 2013 Mar 14.

Published in final edited form as: Proteins. 2011 Nov 22;80(2):352–361. doi: 10.1002/prot.23183

Table 5.

Comparison of TASSER^VMT with different protocols on the 112 targets.

Protocol	SP³ default alignment^#	SP³ alternative alignment^#	HHSEARCH alignment^#	Variable Multiple Templates^#	80 Easy targets	32 Hard targets
Protocol	SP³ default alignment^#	SP³ alternative alignment^#	HHSEARCH alignment^#	Variable Multiple Templates^#	Cumulative GDT-TS	Cumulative GDT-TS
A^*	+	−	−	−	49.34	9.27
B	+	−	−	+	51.59	9.95
C	−	+	−	+	52.06	10.17
D	+	−	+	+	53.12	9.96
E	+	+	−	+	53.48	10.45
TASSER^VMT	−	+	+	+	54.28	10.57

+/− indicates the component is included/excluded in the protocol.

In this protocol, a single set of top 10/20 SP³ templates were used for Easy/Hard targets.