Table 1.
Summary of sample size, number of haplotypes, haplotype diversities (h), nucleotide diversity (π, θ), Tajima’s D and Fu’s (Fs) test, Ramos-Onsins and Rozas’ R2 and exponential growth rate (g) for mt DNA Cyt b region sequences in each population.
Region subregion | Populations (Abbreviation) | Sample size | Haplotype numbers | Haplotype Diversity (h) | Nucleotide diversity (π) | Nucleotide diversity (θ) | Tajima’s D* | Fu’s FS | R2 | g |
---|---|---|---|---|---|---|---|---|---|---|
Mainland China | 155 | 92 | 0.983 | 0.02073 | 0.03295 | −1.19838 | −33.072*** | 0.0584 | ||
Yangtze River | 33 | 20 | 0.939 | 0.00659 | 0.00908 | −0.99662 | −5.021** | 0.0584 | ||
AnHua (AH) I | 8 | 8 | 1.000 | 0.00583 | 0.00677 | −0.72263 | −3.129* | 0.1136 | 1259.96 | |
Tongren (TR) I | 19 | 10 | 0.854 | 0.00214 | 0.00301 | −1.04808 | −3.859* | 0.0913 | 2180.86 | |
ShangRao (SR) I | 6 | 3 | 0.733 | 0.00140 | 0.00154 | −0.46983 | 0.615 | 0.2894 | 569.91 | |
Qiantang River | 31 | 25 | 0.981 | 0.00834 | 0.01998 | −2.20960** | −10.765*** | 0.0584 | ||
Kaihua (KH) II | 15 | 11 | 0.933 | 0.00836 | 0.01565 | −2.01412* | −1.083 | 0.0766 | 273.56 | |
PingYao (PY) II | 16 | 14 | 0.983 | 0.00787 | 0.01005 | −0.90881 | −4.471* | 0.0998 | 666.16 | |
Oujiang River | ||||||||||
Jinyun (JY) II | 10 | 7 | 0.911 | 0.00823 | 0.00806 | 0.09713 | 0.724 | 0.1648 | 217.45 | |
Minjiang River | ||||||||||
Shunchang (SC) II | 15 | 14 | 0.990 | 0.00855 | 0.01052 | −0.79692 | −5.112** | 0.1015 | 580.04 | |
Mulan River | ||||||||||
Xianyou (XY) II | 17 | 9 | 0.860 | 0.00337 | 0.00493 | −1.24407 | −1.450 | 0.0959 | 31.26 | |
Jiulong River | ||||||||||
Longyan (LY) III | 13 | 5 | 0.628 | 0.00490 | 0.00820 | −1.75948 | 2.843 | 0.1268 | 90.72 | |
Hanjiang River | ||||||||||
Jiaoling (SK) III | 15 | 7 | 0.819 | 0.00459 | 0.00459 | 0.00760 | 0.878 | 0.1424 | 98.89 | |
Pearl River | ||||||||||
Xijiang River | Shaoguan (SG) III | 14 | 10 | 0.890 | 0.00222 | 0.00441 | −2.04167* | −5.409** | 0.0959 | 7760.08 |
Beijiang River | Liuzhou (LZ) I | 7 | 4 | 0.714 | 0.00209 | 0.00179 | 0.82563 | 0.205 | 0.2209 | 504.63 |
Taiwan | ||||||||||
Tamsui River | Tamsui (SD) IV | 5 | 3 | 0.700 | 0.00105 | 0.00126 | −1.04849 | −0.186 | 0.2667 | 9936.337 |
Total | 160 | 95 | 0.984 | 0.02063 | 0.03323 | −1.22243 | −36.677*** | 0.0584 | 193.36 |
Yangtze-Pearl group;
Qiantang-Minjiang group;
Jiulong-Beijiang group;
Taiwan group (SAMOVA);
P < 0.05;
P < 0.01;
P < 0.001;
g estimated with LAMARC.