Table 1.
The protein-like properties of sequence evolution over simulation time is shown
| Simulation time | Model | Core | Surface | Gamma Support | Shape Parameter |
|---|---|---|---|---|---|
| Hydrophobicity | Hydrophobicity | ||||
| (%) | (%) | ||||
| 5000 | Informational | 39.7 | 11.2 | 0.35 | 0.02 |
| 25000 | Informational | 42.1 | 15.2 | 0.72 | 0.95 |
| 50000 | Informational | 42.9 | 18.5 | 0.72 | 1.46 |
| 70000 | Informational | 45.0 | 20.4 | 0.69 | 1.55 |
| 100000 | Informational | 47.4 | 23.0 | 0.73 | 2.07 |
| 150000 | Informational | 47.7 | 27.7 | 0.49 | 2.61 |
| 200000 | Informational | 49.6 | 30.5 | 0.12 | 2.73 |
| 5000 | Physics-based | 83.4 | 49.2 | 0.20 | 3.31 |
| 25000 | Physics-based | 82.8 | 49.5 | 0.37 | 2.58 |
| 50000 | Physics-based | 81.7 | 49.1 | 0.31 | 2.06 |
| 70000 | Physics-based | 81.7 | 48.4 | 0.61 | 1.86 |
| 100000 | Physics-based | 81.1 | 48.6 | 0.09 | 1.87 |
| 150000 | Physics-based | 81.6 | 48.2 | 0.25 | 1.76 |
| 200000 | Physics-based | 81.1 | 48.0 | 0.10 | 1.88 |
Simulation time is listed in generations. Core and surface hydrophobicities shown reflect the population average percentage of hydrophobic residues in buried and exposed positions. Gamma support indicates the fractional support for a model including a gamma distribution of rates, and the shape parameter shows the α value of such a distribution.