Table 1.
Bacterial and fungal strains used for inclusivity and exclusivity testing of the developed real-time PCR assay
| Organism | Strain |
|---|---|
| Dichelobacter nodosus | CCUG 27824T |
| Dichelobacter nodosus | AN363/05 |
| Dichelobacter nodosus | AN484/05 |
| Dichelobacter nodosus | 07-BKT18497 |
| Dichelobacter nodosus | 07-BKT21558 |
| Dichelobacter nodosus | 07-BKT22285 |
| Dichelobacter nodosus | 07-BKT24952 |
| Dichelobacter nodosus | 08-BKT63297 |
| Dichelobacter nodosus | 09-BKT91977(5) |
| Dichelobacter nodosus | 09-BKT94362(4) |
| Actinobacillus pleuropneumoniae | CCUG 12837 |
| Bacillus anthracis | 7702 |
| Bacillus anthracis | 4429 |
| Bacillus cereus | B. cereus |
| Campylobacter coli | SLV-271 |
| Campylobacter jejuni | SLV-542 |
| Enterobacter cloacae | SLV-011 |
| Enterococcus durans | SLV-078 |
| Escherichia coli | U226 |
| Escherichia coli | B266 |
| Escherichia coli | L278 |
| Escherichia coli | UM245 |
| Escherichia coli | S262 |
| Escherichia coli | XL-1 blue |
| Escherichia coli EIEC | 121 |
| Escherichia coli O113:H21 | 98NK2 |
| Escherichia coli O157 | SLV-479 |
| Escherichia coli O157 | EDL933 |
| Escherichia coli O157:H- | 493/89 |
| Escherichia coli O26:H11 | H2954/06 |
| Francisella tularensis | T8 |
| Fusarium culmorum | F.c |
| Fusarium graminearum | F.g |
| Fusobacterium necrophorum subsp. funduliforme | CCUG 42162 |
| Fusobacterium necrophorum subsp. necrophorum | CCUG 9994 |
| Haemophilus influenzae | ATCC 49247 |
| Histophilus somni | CCUG 28029 |
| Klebsiella pneumoniae | SLV-186 |
| Listeria ivanovii | SLV-348 |
| Listeria monocytogenes | SLV-513 |
| Proteus mirabilis | SLV-374 |
| Pseudomonas aeruginosa | SLV-395 |
| Pseudomonas aeruginosa | SLV-453 |
| Salmonella Dublin | SLV-242 |
| Salmonella Typhimurium | SLV-248 |
| Shigella boydii | 33/08 |
| Shigella dysenterieae | 15/08 |
| Shigella flexneri | 100/08 |
| Shigella sonnei | 99/08 |
| Staphylococcus aureus | SLV-438 |
| Staphylococcus xylosus | SLV-283 |
| Vibrio cholerae | CCUG 4070 |
| Vibrio parahaemolyticus | CCUG 4224 |
| Vibro vulnificus | CCUG 16397 |
| Yersinia enterocolitica | SLV-408 |
| Yersinia pestis | KIM |
| Yersinia pseudotuberculosis | TAVA81 |