Table 3. Results of population differentiation tests for the Madagascar dataset analyses.
| Population pair | |||||
| AAM-ALA | AIT-TSO | FIR-MAE | MATo-VEL | ||
| Fdist2 analysis | Msat-Tnf | 0.441 | 0.226 | 0.272 | 0.457 |
| D20Img2 | 0.167 | 0.003 | 0.052 | 0.207 | |
| Supposed neutral loci revealing significant (p-value) | Rr067 (0.017) D11R56 (0.006) | D10R20 (0.045) | Rr067 (0.026) D7R13 (0.023) | Rr014 (0.005) Rr054 (0.011) | |
| DetSel analysis | Msat-Tnf | 0.61 | 0.41 | 0.84 | 0.49 |
| D20Img2 | 0.024 | 0.018 | 0.102 | 0.159 | |
| Supposed neutral loci revealing significant (p-value) | D11R56 (0.003) | Rr093 (0.003) | D10R20 (0.049) Rr114 (0.039) | D7R13 (0.001) | |
The p-values associated with each of the two tests (Fdist2 [43] and DetSel [44], [45] analyses) for each of the four population pairs are reported for the two MHC-linked loci: Msat-Tnf and D20Img2. The supposedly neutral microsatellites for which a significant result was obtained in the analyses are also indicated, together with their p-values (in the case of Fdist2 analysis, all the presumed neutral loci revealing significant had FST higher than expected).