Table 1. Primer and probe sequences for JAK2 exon 12.
Primers | Sequence 5′-3′ |
JAK2exon12-Forw | CAGATAAATCAAACCTTCTAGTCTTC |
JAK2exon12-wt-Rev | CAAATCTTCATTTCTGATTTTGTtA |
JAK2exon12-N542-E543del-Rev | TGACTTACAAATATCAAATCTCTGA |
JAK2exon12-E543-D544del-Rev | CAAATCTTCATTTCTGATTAAGTtA |
JAK2exon12-K539L-Rev | CAAATCTTCATTTCTGATTAAGTtA |
JAK2exon12-H538-K539delinsL-Rev | AAATATCAAATCTTCATTTCTGATTAAA |
JAK2exon12-I540-E543delinsMK-Rev | CAAATATCAAATCTTTCATTTTGTtA |
JAK2exon12-H538QK539L-Rev | CAAATCTTCATTTCTGATTAATTtA |
JAK2exon12-R541-E543delinsK-Rev | CAAATATCAAATCTTTGATTTTGTtA |
JAK2exon12-F537-K539delinsL-Rev | CAAATCTTCATTTCTGATTAACACtA |
Primers only for quantitative determination | |
JAK2exon12-wt (N542-E543del)-Rev | AATGACTTACAAATATCAAATCTTCA |
JAK2exon12-V536-I546dup11-Rev | TTTGTGAAACACTATCAAATCTTC |
JAK2exon12-F537-I540delinsLV-Rev | AAATATCAAATCTTCATTTCTCACTA |
Probe | |
JAK2exon12 probe | Fam-CCAACCTCACCAACATTACAGAGGCC-Tamra |
Primers used for qPCR screening and quantitative determination consisting of a common forward primer and probe in addition to a mutation specific reverse primer. The primers listed for quantitative determination were only used exclusively for determination of mutant allele burden. Lowercase letters in sequences indicate intended mismatches.