Table 5.
Top 20 most significant GO terms found associated with miR156 targets in the rice transcriptome.
| Rank | Cellular component | Molecular Function | Biological function | |||
|---|---|---|---|---|---|---|
| Go Terms |
Significance (P-value) |
Go Terms | Significance (P-value) | Go Terms | Significance (P-value) | |
| 1 | cell wall | 2.20e-16 | RNA binding | 2.20e-16 | cellular protein metabolic process | 2.20e-16 |
| 2 | cytosolic large ribosomal subunit | 2.20e-16 | copper ion binding | 2.20e-16 | DNA replication | 2.20e-16 |
| 3 | ribosome | 2.20e-16 | aspartic-type endopeptidase activity | 2.20e-16 | response to cadmium ion | 2.20e-16 |
| 4 | ribonucleoprotein complex | 2.20e-16 | aspartate kinase activity | 2.20e-16 | DNA integration | 2.20e-16 |
| 5 | mitochondrial inner membrane | 2.20e-16 | DNA-directed DNA polymerase activity | 2.20e-16 | translation | 2.20e-16 |
| 6 | Golgi apparatus | 2.20e-16 | zinc ion binding | 2.20e-16 | cellular amino acid biosynthetic process | 2.20e-16 |
| 7 | cytosolic small ribosomal subunit | 2.20e-16 | ubiquitin thiolesterase activity | 2.20e-16 | microtubule-based movement | 2.20e-16 |
| 8 | nuclear pore | 2.20e-16 | microtubule motor activity | 2.20e-16 | cellular amino acid metabolic process | 2.20e-16 |
| 9 | mitochondrion | 2.20e-16 | triose-phosphate isomerase activity | 2.20e-16 | intracellular protein transport | 2.20e-16 |
| 10 | cytoplasm | 2.20e-16 | branched-chain-amino-acid transaminase activity | 2.20e-16 | protein import into nucleus, docking | 2.20e-16 |
| 11 | cytosol | 2.20e-16 | structural constituent of ribosome | 2.20e-16 | shoot development | 2.20e-16 |
| 12 | cytoskeleton | 2.20e-16 | nucleic acid binding | 2.20e-16 | proteolysis | 2.20e-16 |
| 13 | cytosolic ribosome | 2.20e-16 | translation initiation factor activity | 2.20e-16 | branched chain family amino acid metabolic process | 2.20e-16 |
| 14 | nucleolus | 2.20e-16 | DNA binding | 2.20e-16 | ubiquitin-dependent protein catabolic process | 2.956e-16 |
| 15 | plasma membrane | 5.21E-015 | glyceraldehyde-3-phosphate dehydrogenase activity | 2.20e-16 | embryo development ending in seed dormancy | 1.114e-15 |
| 16 | proteasome complex | 1.09e-14 | NAD binding | 4.27E-015 | vesicle-mediated transport | 3.006e-15 |
| 17 | COPI vesicle coat | 1.20e-13 | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 1.649e-14 | rRNA processing | 1.756e-14 |
| 18 | outer membrane | 1.39e-12 | ligase activity | 1.96e-14 | translational elongation | 2.675e-14 |
| 19 | protein complex | 1.43e-15 | unfolded protein binding | 2.25E-014 | protein folding | 4.47E-014 |
| 20 | small ribosomal subunit | 3.20e-12 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 2.67e-14 | response to hormone stimulus | 1.870e-13 |
The top scoring 20 terms associated with three GO categories are given with their associated significance scores (p-value).