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. Author manuscript; available in PMC: 2013 Apr 1.
Published in final edited form as: Proteins. 2012 Jan 24;80(4):1177–1195. doi: 10.1002/prot.24018

Table 1B.

Extended Kahraman dataset.

Binding ligand molecule Average Size (Å) Average number of seed Number of PDB entries PDB entries
AMP 8.8 22.2 5 1NH8A, 1QGXA, 1Y1PA, 1Z84B, 2R85B
ATP 9.5 32 4 1MJHA, 1OBDA, 1WUAA, 2YW2A
FAD 11 43.5 29 1B5QA, 1C0PA, 1EL5A, 1F0XA, 1F20A, 1F8SA, 1FNDA, 1GPEA, 1JU2A, 1KRHA, 1PBEA, 1PN0B, 1Q1RA, 1RYIA, 1TT0C, 1U8VA, 1W1OA, 1W4XA, 1X0PB, 1YOAA, 1ZK7A, 2BA9A, 2J4DA, 2MBRA, 2OLNA, 2QCUA, 2VFRA, 2YR5A, 2YYJA
FMN 9.7 30.8 8 1D3GA, 1JUEA, 1USCA, 1VYRA, 2D37A, 2H8ZA, 2NR4A, 2PIAA
GLC 8.5 11 9 1JG9A, 1PWBC, 1QK2A, 1RMGA, 1UA4A, 1UOZA, 2J73B, 2V8LA, 3BC9A
HEM 10.2 38.8 26 1BU7A, 1EW6A, 1FS7A, 1FT5A, 1GEJA, 1IO7A, 1IRDA, 1IT2A, 1IW0A, 1J0OA, 1KR7A, 1SY7A, 1TU9A, 1U55A, 1W4WA, 1YRCA, 256BA, 2BKMA, 2IJ7A, 2J0PA, 2Q9FA, 2RCHA, 2W31A, 2W3FA, 3B6HA, 3CX5D
NAD 10.1 39.9 15 1C1DB, 1DXYA, 1GIQA, 1GY8D, 1KOLA, 1N2SA, 1OBBB, 1ORRA, 1PL8A, 1R66A, 1SG6A, 1U1IA, 2DVMB, 2H7MA, 2VHXE
PO4 7.4 8.43 48 1A9XA, 1AOPA, 1AQZA, 1DXEA, 1EX2A, 1JE0A, 1K27A, 1KV8A, 1LC0A, 1NV0A, 1OWLA, 1P0KA, 1P1JA, 1PIIA, 1Q11A, 1RKDA, 1RWHA, 1T46A, 1TG7A, 1THFD, 1TZYE, 1V2XA, 1WCHA, 1WOQA, 1XA1B, 1XW3A, 1Y6VA, 1YB0A, 1YN9A, 1YRRA, 1YSQA, 2FYQA, 2HEKA, 2HHCA, 2IMFA, 2JE2A, 2JFRA, 2O4UX, 2O4VA, 2V3QA, 2VBMA, 2VLBC, 2VM9A, 2W3ZA, 2YXTB, 2ZAUA, 3B7NA, 3E9DA