Table 1.
The 14 scaffolds produced by Velvet on re-assembling putative Wolbachia wDi reads separately with stringent parameters
| Velvet Assembly Contig ID | Length (bases) | k-mer coveragea | Annotated (RAST) features | Best blastn hit at 1e-5 |
|---|---|---|---|---|
| 8 | 271027 | 366.2 | 250 | Alphaproteobacteria |
| 27 | 219165 | 361.0 | 198 | Alphaproteobacteria |
| 4 | 126756 | 341.2 | 123 | Alphaproteobacteria |
| 18 | 86768 | 358.2 | 98 | Alphaproteobacteria |
| 3 | 76276 | 356.0 | 73 | Alphaproteobacteria |
| 5 | 56458 | 343.8 | 52 | Alphaproteobacteria |
| 10 | 44684 | 374.7 | 45 | Alphaproteobacteria |
| 1 | 39257 | 370.7 | 31 | Alphaproteobacteria |
| 28 | 1004 | 1705.9 | Alphaproteobacteria | |
| 6 | 381 | 1938.6 | ||
| 26 | 325 | 157.2 | ||
| 87 | 258 | 182.4 | ||
| 42 | 215 | 273.1 | ||
| 13 | 208 | 246.0 |
aVelvet reports ‘k-mer’ coverage rather than read coverage. The two are linearly related